barSeed - Barley Seed Development Database

Probe CUST_42219_PI390587928

Source Contig U35_36771

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42219_PI390587928	Hv_44K_v2	ATGCCTTTTAGCTGCATCATCATTTAAACTTCATAATAAATCTGCATCAGATTCTGCAGC	457	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14121.1	4805	2e-24	3467 - 3526	100	60 / 60	plus	ABC13047
JLOC1	JLOC1_9624.1	4957	8e-25	3470 - 3529	100	60 / 60	plus
Harvest21	ABC32073	539	3e-25	458 - 517	100	60 / 60	plus
Harvest35	U35_36771	539	3e-25	458 - 517	100	60 / 60	plus

Contig Sequence (539 bp)

>U35_36771 539 Hv_44K_v2
GTGGTGAAGGTGAGCTTTGGGGTTCGGTTACCGGTACAGATGATAAAACCTGTGAAGAAA
GCAAAGATTTTCTTCTAGTTATTTGCAAGGATTCCGCTAGCAGGAGGGGTGATGGTGAAG
GTAACAATGTATTGTCTTTTGGTACTGCTGGCTGTTCCGTGACCCACATCAGGAACCCAA
ACCTACAAGAGAATTATACTTCTGTCAATGTTCGTTCTGGGACAATTGTGGCACCTGGTG
GACGTATGGATTGGGTCAGTGGAATATCTTCGCTGTTCAGTTCAGGTTCAAGTGGAACTG
AACAATCCAAGAACAGTAGTAGCACAAATAATTCACAGGCTGGCGAACCGTTTTGGTCCT
CTTTTTTTCTCGAGTTAGCCGATGTTGCTCTGAGCTATGAACCTCACCTGAAAAATTCCT
CATTCAATGCTGACGCTCCGGACTGCAAGTTTTTCTCATGCCTTTTAGCTGCATCATCAT
TTAAACTTCATAATAAATCTGCATCAGATTCTGCAGCTACTGATTTTGATATCCAACTG

Homology of Contig U35_36771 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g15700.1	1920	3e-72	protein\|expressed protein
Brachypodium v1_2	Bradi1g43830.2	1949	7e-86
Arabidopsis v10	None