- Probe CUST_42216_PI390587928
- Source Contig U35_36775
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42216_PI390587928 | Hv_44K_v2 | AATAAACAGTTTGCACTTGGGACAAAATTCAGGGACGGCGAATCCAAGGTTGGTGGTGAT | 83 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.513 | 2.047 | 1.302 | 0.662 | 0.151 | 0.137 |
| Raw | 1587.797 | 962.239 | 513.893 | 406.025 | 35.720 | 32.934 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_16466.1 | 647 | 7e-23 | 531 - 590 | 98 | 59 / 60 | minus | None |
| JLOC1 | JLOC1_11336.1 | 1181 | 4e-23 | 762 - 821 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32080 | 471 | 3e-25 | 84 - 143 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36775 | 471 | 3e-25 | 84 - 143 | 100 | 60 / 60 | plus |
Contig Sequence (471 bp)
>U35_36775 471 Hv_44K_v2 GCCCTAGGCTGTACATCTACGCCACTAACGACGGCGGCGTGAATTCGCACTGCTTGAATC ATGACTGCGGGTTCATTCAGACGAATAAACAGTTTGCACTTGGGACAAAATTCAGGGACG GCGAATCCAAGGTTGGTGGTGATCTCTACTTCGTCTCGGTTGCGCTGTACAGGCAGACCG GGCCGGCGGTGTGGTGGTTGTCCATCAACGAGGTGGCCATCGGCTACTTCGACTCGAGCT TCTTCCCGATGCCCTTCATCGAGAGCTTCCACAACCAGATGGGCGGACGTGTGCTGGACA CGCGGCCGGGGGGCAGGCACACCATGACGCGGGTGGGCAGCGGCATGTACGGCTCGGCAG GGGCCAACAACGCCGCCTCTATCGCCTATTACCTAGGCATCAACAACGACGGCGGCGACC AAGTGGATGACCCTGTCAACAACATCGTCACTAATCACAAGTGCTACGATG
Homology of Contig U35_36775 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |