barSeed - Barley Seed Development Database

Probe CUST_42215_PI390587928

Source Contig U35_36777

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42215_PI390587928	Hv_44K_v2	TTTGCGTCGTGATGCTTGAATGAAATTGCAATGGAAAAGTTCAGTCATGATGCTAAAAAA	444	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38506.1	309	3e-22	119 - 174	100	56 / 56	minus	ABC00106 ABC00186
JLOC1	JLOC1_25045.1	309	1e-22	119 - 174	100	56 / 56	minus
Harvest21	ABC32088	515	3e-25	445 - 504	100	60 / 60	plus
Harvest21	ABC00186	664	3e-25	594 - 653	100	60 / 60	plus	ABC00186
Harvest35	U35_36777	515	3e-25	445 - 504	100	60 / 60	plus
Harvest35	U35_14041	664	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (515 bp)

>U35_36777 515 Hv_44K_v2
GCCGGATCCTTCTCCCCCCAGCTCCGATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCA
CCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCTGCTCGCAAGTCGGCGCCGG
CGACCGGCGGGGTCAAGAAGCCGCACCGTTTCCGTCCCGGCACCGTCGCCCTCCGCGAGA
TCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTCT
TCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACA
TCCAGCTCGCCCGCCGCATCCGCGGGGAGCGCGCCTAGGTTTTTGGTCGCCGCTGGCTAG
TAGCAGTTCTTGTCCTGTGGTCCGGATGTGTGTCGGGTGCTTCTGTTCGTTTGTGTTGAT
ATGATACGATGTGTCGTCTGATCCTTTGCGTCGTGATGCTTGAATGAAATTGCAATGGAA
AAGTTCAGTCATGATGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_36777 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None