- Probe CUST_42209_PI390587928
- Source Contig U35_48754
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42209_PI390587928 | Hv_44K_v2 | TTTGCTCGGACGGTTCAGTGCCACATAATAATGAACGGAGAGTTTTTGTGCAGTAAAAAA | 11 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.034 | 0.069 | 0.493 | 1.787 | 1.692 | 2.325 |
| Raw | 28.539 | 90.364 | 590.794 | 3246.600 | 1099.231 | 1627.201 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_48754 | 109 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (109 bp)
>U35_48754 109 Hv_44K_v2 TTTTTTTTTTTTTTTTTACTGCACAAAAACTCTCCGTTCATTATTATGTGGCACTGAACC GTCCGAGCAAACAAATCAATCTGACGAGTTTTTTACTCTGCTGACCACC
Homology of Contig U35_48754 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |