barSeed - Barley Seed Development Database

Probe CUST_42205_PI390587928

Source Contig U35_48758

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42205_PI390587928	Hv_44K_v2	ATTTTATACTGAATCTGAACGAATGCTCTATCATGTGCAACGTTAATGGAAACGGTGCAT	24	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40086.1	273	2e-23	1 - 58	100	58 / 58	minus	None
JLOC1	JLOC1_26191.1	687	8e-25	518 - 577	100	60 / 60	plus
Harvest35	U35_48758	524	3e-25	25 - 84	100	60 / 60	minus

Contig Sequence (524 bp)

>U35_48758 524 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAACAAATGCACCGTTTCCATTAACGTTGCACATGATAGAGC
ATTCGTTCAGATTCAGTATAAAATGTTCTCACATCAGCTCATCCCGAGCTGAAAAAAGAA
TTTTAAAAGAGCATCAAAAGCAGATCAATGCAATTGTGAAGGCTTGTGAACTGCAGAAGT
ACAAACGGTAAAAGGAGACAAGTTTAGGGCTCACTTATTCATTCATTCCACAGTTCATCC
AAATCTGCTGCACCACAGAAATTCATGGGACACAACCAAACATAACGCTAGACCACAACA
CAGTAGTAACGAAGAACATAACGCTAGACCAGATGACGGACACGCCGATAATTCAAAGAC
AGCTAAATTGTGAGCCCAGAGACATAAGCAGCTCCATGGCCAAGCACTTACAGGCCACCA
CGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTG
CGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTG

Homology of Contig U35_48758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None