barSeed - Barley Seed Development Database

Probe CUST_42202_PI390587928

Source Contig U35_36783

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42202_PI390587928	Hv_44K_v2	TAAAGCTAGATAGTGCGACTCGCAGCACAAGCTAAAACCCCATGTACATGATCCAGAAGT	400	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.548	2.614	1.182	0.659	0.315	0.281
Raw	62.375	95.711	39.447	35.644	4.756	5.358

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373691	1429	2e-24	1136 - 1195	100	60 / 60	plus	None
MLOC	MLOC_52752.5	1204	2e-24	157 - 216	100	60 / 60	minus	None
MLOC	MLOC_52752.4	1313	2e-24	223 - 282	100	60 / 60	minus	None
MLOC	MLOC_52752.3	994	2e-24	223 - 282	100	60 / 60	minus	None
MLOC	MLOC_52752.2	617	2e-24	223 - 282	100	60 / 60	minus	None
MLOC	MLOC_52752.1	1735	2e-24	640 - 699	100	60 / 60	minus	None
JLOC1	JLOC1_33821.1	1714	8e-25	954 - 1013	100	60 / 60	plus
Harvest21	ABC32096	469	3e-25	401 - 460	100	60 / 60	plus
Harvest35	U35_36783	469	3e-25	401 - 460	100	60 / 60	plus

Contig Sequence (469 bp)

>U35_36783 469 Hv_44K_v2
GCTCTGAAGGAACCACACCTGGAATCAACCTCCGCTGGTATCTTGATACTGCTGGACTGA
AAAGATCCAAGGCCTATATCGTAAATGGTACCTTAATGGTTGCTGCATGGCTGGTGGCAC
GGATAATTCTCTTCATCTACTTGTTCTACCATATCTACTTCCACTATGATGACGTGATGC
AGATGCGGTTCTTCAGCTGCCTTCTGATATTTGGCGTGCCCTCGATACTACTCATCATGA
ATACGATATGGTTTGCAAAGATCTTGAGAGGCCTTAAAAAGACGCTAGCCAAGAGGGAGT
GAAGAGGAGAAGAATAGCAGCAGATGCAAACTCGTGTCCGCCCATCTACACAAACCATCA
CCCTGCCATACAGTCACATAAAACTACATATACTCCCAAGTAAAGCTAGATAGTGCGACT
CGCAGCACAAGCTAAAACCCCATGTACATGATCCAGAAGTATGCTTGAG

Homology of Contig U35_36783 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None