barSeed - Barley Seed Development Database

Probe CUST_42200_PI390587928

Source Contig U35_36786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42200_PI390587928	Hv_44K_v2	AAGATCAGAGTATTCTGGCTGATGGGGATATCAATGAAGAGGCTGATATGCTTGAGAACA	487	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.248	1.236	1.303	0.873	0.392	0.321
Raw	1045.957	1595.933	1481.517	1462.379	248.833	218.763

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60290.5	2235	2e-24	1788 - 1847	100	60 / 60	minus	None
MLOC	MLOC_60290.3	2210	2e-24	1759 - 1818	100	60 / 60	minus	None
MLOC	MLOC_60290.1	2402	2e-24	2046 - 2105	100	60 / 60	minus	None
MLOC	MLOC_60290.2	2383	2e-24	2013 - 2072	100	60 / 60	minus	None
JLOC1	JLOC1_39302.2	2536	8e-25	389 - 448	100	60 / 60	plus
JLOC1	JLOC1_39302.1	2362	8e-25	297 - 356	100	60 / 60	plus
Harvest21	ABC32104	550	3e-25	488 - 547	100	60 / 60	plus
Harvest35	U35_36786	550	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (550 bp)

>U35_36786 550 Hv_44K_v2
GACAAGGACAGGAGCCGTAACAGAGACAAGAACAAGGAGAAGGAGGATAGGGAACGGGAG
AAGCCGAGGGGAAAGGACCGTGGAGAAGATGCAGATTTGTCTAAGGGTGATGAGGGAGAC
CAGAAGAAGGGAGTTGTCTTCCCAGGAGAGTCTGACCAGGCCTCTACAAATGCCCTCCGT
TTTCGCATTGCGAGGGCCAAGGAAGAAAGGCTGAAGGATCAAAAGGAAGGAGGAATTCTG
GATGATAAAGATGATGCTTCAGAGATACTATCATGGGTAGGAAAGAGTCGTAAACTTGAT
GAGAAAAGACAAGCTGAAAAGGAGAAGGCGTTACGTCTTGCACGAGTATTTGAGGAGCAG
GATGAGATGTTAGCAGATGATGACGATGATGAGGATGATAAACTTGAAGGAGAGCACTTA
TCTGGAGTGAAGGTTCTTCACGGGCTTGACAAAGTCATAGAAGGTGGAGCAGTTGTCATG
ACTCTCAAAGATCAGAGTATTCTGGCTGATGGGGATATCAATGAAGAGGCTGATATGCTT
GAGAACATCG

Homology of Contig U35_36786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g60140.1	821	2e-63
Arabidopsis v10	None