barSeed - Barley Seed Development Database

Probe CUST_42191_PI390587928

Source Contig U35_48767

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42191_PI390587928	Hv_44K_v2	TAGAAAAAATTGCGCATTGCTGGCATTTGCACTTTAAAGCCCAAATTGGGTCGGCCCGAT	17	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.979	2.439	1.180	0.729	0.338	0.370
Raw	436.966	562.332	234.798	229.754	38.445	44.697

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_48767	461	3e-25	18 - 77	100	60 / 60	minus

Contig Sequence (461 bp)

>U35_48767 461 Hv_44K_v2
TTTTTTTTTTTTTTTTTATCGGGCCGACCCAATTTGGGCTTTAAAGTGCAAATGCCAGCA
ATGCGCAATTTTTTCTAACGCAAAACTTAAAAATCCACATGCCCAAAAACATCCCAGTTC
ATTCCAGCCAAACGAGCACAGATCACGCGGAACACCACGGCCATAGCCATAGAGCCAAGG
AGCGGAAAACTTCAAACTTACGAGTTTTACACGGGGACATTATGCGTAACAAATTTTCAT
CGCCATCTCGAGATCAGCTACATTCTTTCTAAAGTCCTAACCCTTGCATATTGATATGCA
CAAGCAGTATATTATTCCCAAATCAGATTGTTTTACTGCGGTAGTCTGTCGTTGGTGCAC
AAAACCTGGCCTTGTTTTGAGCATTGCTTCGCAGGCTTCAGTTCATGGCCTTGTAGCACC
TGAAAGCGGCGAACGCCGTTGCAGCAGCGGCAACAACAGCA

Homology of Contig U35_48767 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None