barSeed - Barley Seed Development Database

Probe CUST_42187_PI390587928

Source Contig U35_36792

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42187_PI390587928	Hv_44K_v2	CGGTTTGACATGAAAACATACTTTGATTGATTTTGGAGTAGGAGACATGAGAATTCCTGC	536	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.006	2.111	1.282	0.820	0.332	0.439
Raw	801.014	1330.306	701.633	705.015	97.238	144.168

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373333	1318	2e-24	1251 - 1310	100	60 / 60	plus	None
MLOC	MLOC_69463.1	1035	2e-24	946 - 1005	100	60 / 60	plus	None
MLOC	MLOC_69463.2	1042	2e-24	953 - 1012	100	60 / 60	plus	None
JLOC1	JLOC1_46025.1	1243	8e-25	1005 - 1064	100	60 / 60	plus
Harvest21	ABC32114	599	3e-25	537 - 596	100	60 / 60	plus
Harvest35	U35_36792	599	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_36792 599 Hv_44K_v2
CTTTTGACTACATTGCAAAACATGGTAACTTCAGTTACACCGAGCGGTTTGCTGTGAAGT
ATGCTGGTGCTGCAGCAATGTACTTCGTGGCTAAGAAGCTTAAGAAGAAATACAACATTA
CTGATGAGCGTGCCTCATTGTATGATGCGGCCAACACGTGGACGGAAGCCCTGAATGGAA
GAAATTTTCTCGGTGGCTCCAAGCCTAACTTGGCAGATCTGGCAGCATTTGGTGTTCTGA
GACCTATCAGATACCTGCAGTCTGGAAAAGACATGGTTGAGCATACCCAAATCGGCGAGT
GGTACCAGCGGATGGAAGATGCGGTCGGAGAACCATCGAGAATCCCGGAGGGCCAGTACC
AGGAGTAGAGAAAAAATATCGCCACTATTAGGTTTTTGTTTGCTCGTTCAGGTCCTCATT
TCGAATGGATGAAATCGATTGGAATGCCTGTCTTTCATAGACAGTAGAGCTATTGAAATT
TTGCCAAGGTTTTAGTAGTATGCAATAATGCTGCCACATATATGAAGTTAAATACACGGT
TTGACATGAAAACATACTTTGATTGATTTTGGAGTAGGAGACATGAGAATTCCTGCTTC

Homology of Contig U35_36792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g17050.1	320	3e-68	protein\|glutaredoxin family protein, expressed
Brachypodium v1_2	Bradi5g04550.1	315	4e-68
Arabidopsis v10	AT5G42150.1	315	8e-59	Glutathione S-transferase family protein \| chr5:16846247-16847909 FORWARD LENGTH=315