barSeed - Barley Seed Development Database

Probe CUST_42181_PI390587928

Source Contig U35_48771

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42181_PI390587928	Hv_44K_v2	CCACAGGATCATATCACCATCTGGCCGCAAAAAATAAAATCAGCATTTGATTTGAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64016.1	1531	3e-22	12 - 67	100	56 / 56	minus	ABC15214 ABC24352
JLOC1	JLOC1_41992.1	1379	1e-22	1280 - 1335	100	56 / 56	plus
Harvest35	U35_48771	578	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (578 bp)

>U35_48771 578 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAAATCAAATGCTGATTTTATTTTTTGCGGCCAGATGGTGATA
TGATCCTGTGGTTTGGCAGCAGCAACTCGTAGATACGGTACATGTACAGTACGCAGGCCT
AGCAGTAACGGTTGCATGTGGACATGATGGGCGGCGCGGCGAACGGGCCGTCGAGCACCC
CGCGGGCCATGATCTTGTACGCGGCCTCTGTCATGTGCAGGCCGTCAAACGACACGTACG
TCGACGGGTCCGGGCACGGTACCGCCGCCGGCCCGGCGTCCAAAACGGGGTAGCACGCCT
TCAGCACGGTCTCCCCGCCGAACCCGTTCTCCGCCGGCTTGGTGATGAAGGCGAGCACGT
CGTCGTAGGTGTTGACGTAGGTGATGGACACGCCTGGGTGGTCGCGGCGCAGCTCCTCGA
GCTTGGCTTTCAGCATGTGGTTGTGGAGGAGGACGAGGTCGTTGAGCCACCGGAGGCAGC
CCGTGGCAGGGTCGCGGTCGTCGCCGGGGAAGAGGAAGAGGAACCGCGGGGTGCACCCCA
GCGGGAAGATGCCCGGAACGTACATGGTCTTGGCGCCC

Homology of Contig U35_48771 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44780.1	392	2e-51	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi1g19840.1	388	7e-60
Arabidopsis v10	None