barSeed - Barley Seed Development Database

Probe CUST_42177_PI390587928

Source Contig U35_48775

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42177_PI390587928	Hv_44K_v2	CACCGGACGGCTCCTGTCATGTACGAGAAAACTCAAACAGATTGGATTTAGCATAAAAAA	50	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63805.1	1860	2e-24	1475 - 1534	100	60 / 60	plus	ABC19199
Harvest35	U35_48775	573	3e-25	51 - 110	100	60 / 60	minus

Contig Sequence (573 bp)

>U35_48775 573 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAATCAATCGACTGAGTTATAGTCGCTCCGCTTTTTTTATGC
TAAATCCAATCTGTTTGAGTTTTCTCGTACATGACAGGAGCCGTCCGGTGTCTCTGTGTC
GTGATTCATGCAGTGACGGGATGAAATCCCACCTCTCCTAGCAAGCTCACAAGCTTGAGA
AGGTACTCATGGGAGCACCCTCCCTCTGCAACGCTCGCCCACGCCTTGTCCTTCCACGTC
GCCGCCCTCGCCTTGACCCCCTCGTCGCCGAGCAGCCGCGCCACCATGCTCTCGATCTCC
TCCTTGGCGACGACCCCTCGCTCGTCTCGCCGGAGCTTCATGCCCGTGCCCCACACGTTG
CACAAGTAGCTCTGGTTGGCGAACTGGTCGGCGAAGTAGGGCCAGCACAGGAACGGCACG
CCGTGCAGCATGCCTTCCATGGTCGAGTTCCACCCGCAGTGCGACACGAAGCAGGCCACG
GCGCGGTGCGAGAGCACGCGCTGCTGCGGCGCCCAGCCGACGATCAGACCCTTTCCCTCG
ACGCGGCGCCTGAACGCGTCGAACCAACCTTCT

Homology of Contig U35_48775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55040.1	458	6e-70	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g08145.1	463	4e-71
Arabidopsis v10	None