barSeed - Barley Seed Development Database

Probe CUST_42174_PI390587928

Source Contig U35_48778

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42174_PI390587928	Hv_44K_v2	CTTGTTGTAACACCAAGTATGTGTAGGTGTCAATTTTAGGGAATCTCCGTTTTGATTATT	46	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.983	4.509	1.800	0.807	0.244	0.221
Raw	28.895	210.924	70.500	53.058	3.222	4.089

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76303.3	1655	2e-24	1509 - 1568	100	60 / 60	plus	None
MLOC	MLOC_76303.5	1750	2e-24	1637 - 1696	100	60 / 60	plus	None
MLOC	MLOC_76303.6	741	2e-24	628 - 687	100	60 / 60	plus	None
MLOC	MLOC_76303.1	1776	2e-24	1623 - 1682	100	60 / 60	plus	None
MLOC	MLOC_76303.2	1716	2e-24	1563 - 1622	100	60 / 60	plus	None
JLOC1	JLOC1_50887.2	1713	8e-25	1560 - 1619	100	60 / 60	plus
JLOC1	JLOC1_50887.1	1773	8e-25	1620 - 1679	100	60 / 60	plus
Harvest35	U35_48778	487	3e-25	47 - 106	100	60 / 60	minus

Contig Sequence (487 bp)

>U35_48778 487 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGGTCCACACTATAGATTTCATAAAAATAATAATCAAAACGG
AGATTCCCTAAAATTGACACCTACACATACTTGGTGTTACAACAAGAATTGTAACATCTC
ATATGTTGGCTAACAAACAAGTCATAAATACTGCATCAAACACAACATCTCTCATAAGAG
TGTTGAATTCTTCAGGTAGCTCCTGCTGAACTGCTGAACTTTGCACATACATAGTGGTTA
TTTGTAGGAAAGCAGGTGCCTCGTCTTGCAGGGAACTTGTGAGCTCACTGCATCACTTCT
TTGTCTCGCTGTGTCGCGAGCAGAAGGACTTGAGCCTGTCAAGGGCGTCTTCGAGAGAAG
ACGGTCCGATTGCAAACGTGATCCGGACCCAATTCTTGTATCCCACAGCACACCCTGGCA
AAACAAGCACTGCCTCCTCTTTTGCGAGCTTGCAGCAGAAGTCCATGTCATCTTTGATGT
CCTGAAG

Homology of Contig U35_48778 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None