barSeed - Barley Seed Development Database

Probe CUST_42173_PI390587928

Source Contig U35_48779

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42173_PI390587928	Hv_44K_v2	CAGCAATTTGGTAGCTGTGCCGTTTGTTGGTCACTGCCTTATAGATTTGGGTTGTATCGT	143	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368259	935	2e-24	748 - 807	100	60 / 60	plus	ABC02851
Harvest35	U35_48779	555	3e-25	144 - 203	100	60 / 60	minus

Contig Sequence (555 bp)

>U35_48779 555 Hv_44K_v2
TTTTTTTTTTTTTTTAACAAATTTCATGATCCATATATCAAAATTCCATAGCATCCATAC
ATCCAAAATTCCATAGCATCCATATATACATATAGTTCCATAGCATCCATACATACATAG
CTCCATAGCAAATATAATACACAACGATACAACCCAAATCTATAAGGCAGTGACCAACAA
ACGGCACAGCTACCAAATTGCTGAGGTACATATGGTGATGTGTCAGGGAGAACCAATGAA
AGCTTCGCCATGCAAAGAGTTCTGTTCCTGCACTTATTCAGAAGGATTCCTTTGTTGATC
CTGCGCCATGCATACTCCTCCCAGCCATTTGGTAATGCATCAATGTACTCTTTTGTGAGT
GTTGTGGTACTGTTGCGAACCTAGAAAAAAAACAACTTAAGTCACAAGTTAGTACAGTAC
ATAAAATGCACACCTCCTCCCATGAGGCCACAGCTTCGCAGAGATTGAACTCAAATGCCA
GCCCTTCAGACTCTCCAGTTATTGGATCTTTCTTGAGAGCACGGTTCTCACGGAAGGGCC
TGAGGACGGCGTCCT

Homology of Contig U35_48779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None