barSeed - Barley Seed Development Database

Probe CUST_42163_PI390587928

Source Contig U35_48790

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42163_PI390587928	Hv_44K_v2	TTTCTCGAAGTGACAGAAAGACGATAGATACCCTGGCTAATTCCATTTCCTCAACAGTCT	30	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.636	1.821	1.175	1.026	0.650	0.670
Raw	18.320	34.031	18.324	24.692	4.456	5.741

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55720.4	1424	3e-21	1260 - 1319	97	58 / 60	plus	None
MLOC	MLOC_55720.5	1417	3e-21	1253 - 1312	97	58 / 60	plus	None
Harvest35	U35_48790	506	3e-25	31 - 90	100	60 / 60	minus

Contig Sequence (506 bp)

>U35_48790 506 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTTTTTTTTTGGAAGACTGTTGAGGAAATGGAATTAGCCAGGG
TATCTATCGTCTTTCTGTCACTTCGAGAAAATGGAACGATGCCATGGAAAAACTCAACTA
AGATTCAGTTACAGATATCACACTGTTGTATTTCATAGTGAAGAATAACTAACACATAAT
GCTAATGCATACAAAGTGAACGCATCTAAGATCAATCAAAATGTCCAAAAGTAATTCTGA
CCAACAAAGGGTAGCAATGCTCCTCATTATAGTTGGGCCACGATGTGTCATCTCCTGCCA
CATAGCTTTCGTGCAGATTCCAGACAGTGGGATCATAATTCTCTATCAACTCATAACATA
AACCATATTCTTTGATTGTTTCTAGGAACTTGTTGAGTGAATCACCTCTCCTTGGGCTCA
AAAAGATAGCCTGCGAGGTCTCCGAATGCTTCAACAAAGATTTGACTGTCCAGGCAAGGC
TTTGATGGAATTGCTTGAAAAATGTA

Homology of Contig U35_48790 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g68320.1	347	5e-51
Arabidopsis v10	None