barSeed - Barley Seed Development Database

Probe CUST_42157_PI390587928

Source Contig U35_48796

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42157_PI390587928	Hv_44K_v2	ATGCACATATATCTCGAGTTAAGAGTTGTAATGGAAGTTGATTGAGGGTTGTTTTAGAAC	83	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373923	1305	2e-24	1124 - 1183	100	60 / 60	plus	ABC06718 ABC06720
Harvest21	ABC06718	1321	3e-25	1215 - 1274	100	60 / 60	plus	ABC06718
Harvest35	U35_48796	484	3e-25	84 - 143	100	60 / 60	minus

Contig Sequence (484 bp)

>U35_48796 484 Hv_44K_v2
TTTTTTTTTTTTTTTTTGACCAAAGTATTTTTCAACGTGTGAAGTGAGGCAACACATATT
CTGATAGGGGCGATCACTTAATTGTTCTAAAACAACCCTCAATCAACTTCCATTACAACT
CTTAACTCGAGATATATGTGCATACATGGCATGCAAGCCAACTCTAACTCTAGATATATA
TACATACAATGGTAGTAGAATAATATGAACTGCGCCATCTAGTGGGCTGCAGGTAAAATA
AGATTACCGCATCATCAGGCTTGAAAACTGTCATCTTCGTACACTCTATCATTTGCTAGT
GCAAGGCAGATGTCCACCGAGGTTTTTCATTGCCGATGGCCCTCTGGGAGCGCAACCACT
CTGTAAAATGGAACAGCTCTCTCTGGTAGATTCCCATCCTCTTCGTCATCATCAAATAAG
AGATTGTAATCATCAGATTTCCTCTTACGATGAGAGGCTACGGTGGCCCTATATAGTGCT
GTTG

Homology of Contig U35_48796 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None