barSeed - Barley Seed Development Database

Probe CUST_42154_PI390587928

Source Contig U35_7700

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42154_PI390587928	Hv_44K_v2	GGACAATCTCTAGTGTCTTTAATATTTCCAGTGACTGAGAATTATTCGTTTATGCAAGGA	1428	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.363	2.643	1.136	0.732	0.334	0.335
Raw	10460.797	9812.307	3700.057	3627.277	625.886	665.393

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36518.2	2564	2e-24	2479 - 2538	100	60 / 60	plus	None
MLOC	MLOC_36518.3	2599	2e-24	2473 - 2532	100	60 / 60	plus	None
JLOC1	JLOC1_23519.1	2613	8e-25	2475 - 2534	100	60 / 60	plus
Harvest21	ABC15519	1513	3e-25	1429 - 1488	100	60 / 60	plus
Harvest35	U35_7700	1513	3e-25	1429 - 1488	100	60 / 60	plus

Contig Sequence (1513 bp)

>U35_7700 1513 Hv_44K_v2
ACGCAACTTCTGTTCAGGCTAGAGTTCTGCCTGCTCCAGTGCTGAGCTATCATGGTTCTG
CGTCTTGCTACCCAGAAAAAGGGGCGTGGAACATGAAAGGCAAGAAAGTCATAAATGGTG
CCAAGGTTGGTCTTTGGGCATGTGTAAACTTTTGCACTGATTTGTCTGAGGATCAAGTTC
GTAACTTCTGCCGTGGACTGATTGAAGTGTCCACTGCAACTGGAGTGAACTTCAACGATG
CAAAACTTCAGATATTCTATGCTCGTTCAGATCAAGTTGAAGCCAGACTCCATGAAGTAC
ACCAGCAAGCGGGGAAACTCAAGATTGACCTCGTACTTGCTATATTGCCAGATAAAAATG
GCAGCCTATATGGTGATATTAAAAGGATTTGTGAAACAGACATTGGTCTGATGTCGCAGT
GTTGTCTACATAAAAATGTCTTGAAATCAAATACTCAGTTTCTTGCAAATGTTGCTCTTA
AGATCAATGCCAAGTGTGGGGGGAGGAACTCGGTATTTGCTGATCTAAAACTAAGTTTAC
CAGTTGTTTGTGAAAAGCCAACGATTATCTTCGGTGCTGATGTTACTCATCCTAGTGCTC
TAGATGATACTGCCCCGTCCATTGCTTCTGTTGTTGCCTCCCAAGACTGGCCTCAGGTGA
CCAAGTATCATGGTGATGTTCACGAACAAGGTCACCGCGTAGAGCGCATTGAAGGCCTTG
AGGGCATTGCTAAGAAGCTCCTCCTTTCATTCGAACAGCATTCCAAGCACAAGCCCCAGC
AGCTGATATTCTATAGGGATGGCGTAAGTGAGGGTCAGTTCAGAATGGTTTTGGAGAATG
AGATCCCGGAGATAGAAAAGGCATGGAAGGCGTTATACAATGTGAAGCCGCCAATTACCT
TCATAGTGGTGCAGAAGAGGCACCATACAAGACTGTTCCCAAGTGATGGCAAATATCAGG
ACGACAGTGGAAATGTTATGCCAGGCACAGTGGTTGATAGGCAGATCTGCCACCCAACAG
AGTTTGATTTCTTCCTCTGTAGCCATGCTGGGATCAAGGGAACAAGCCGTCCTGCGCATT
ACCACGTGCTGCGAGATGACAACAACTTCAGTGCTGATGACCTGCAGTCTCTTACAAACA
ACCTGTGCTACACGTATGCAAGCTGCACTCGCTCCGTGTCGACTGCTCCTCCTGCGTACT
ACGCTCATAAGCTTGCGTTTCGTGCGCGATTCTACCTAGCCCAAGTCCCAGACATGGCGT
CGGAGATAAGCGCCGGCAGTGCAGCTTCTTCATTGACGCTTCCTGCTATAAAAGATGAGC
TCAAAAGCCACATGTTCTACTGCCAGTCCCTACAGACATGAACGAAGCCTGAAGCCTGGA
GAAGAACATTTAAGATTTTATTTTGTTTCTGTTGGTTTAATGAACATGGGACAATCTCTA
GTGTCTTTAATATTTCCAGTGACTGAGAATTATTCGTTTATGCAAGGATATGAATGGAAA
TTTTATATGTCCT

Homology of Contig U35_7700 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g28850.1	1089	7e-178	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g28260.1	1076	0.0
Arabidopsis v10	AT5G43810.1	988	9e-163	\| Symbols: ZLL, PNH, AGO10 \| Stabilizer of iron transporter SufD / Polynucleotidyl transferase \| chr5:17611939-17616562 FORWARD LENGTH=988