barSeed - Barley Seed Development Database

Probe CUST_42153_PI390587928

Source Contig U35_7701

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42153_PI390587928	Hv_44K_v2	ATAGGCCTTATTGTTGGTCCAGCCATTGGTGGTTATCTTGCACAGCCAGCAGATAAATAT	655	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366518	1724	2e-24	642 - 701	100	60 / 60	plus	ABC11332
Harvest21	ABC16433	731	3e-25	656 - 715	100	60 / 60	plus
Harvest35	U35_7701	732	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (732 bp)

>U35_7701 732 Hv_44K_v2
GTTTCCGTGGCAGCAACCAAGGCGAGGAGGGCAGAGGCAAAAGCGTTTTCTTTTTCTAGC
TTAGCTTGTGCGGGCATTGCACAGCCCCGGCCGCTTCATCGGTCGGGCGGGGGAGATGGG
CAAAGATGGCGGCGACGGGCTGGAGGGGCCGCTGCTGAAGCGGACCTACTACCACGGCAA
CTGCCCCGGGTGCAGGCTGGACAAGAGCAACGAGGTGCGGAGGGGCGTGCCCTACACCGA
GTTCGCCTGCATGTGGCTCGTCACCGTTTGCTCCACCTTGCCGATACAGTCCTTGTTTCC
CTTCTTGTATTTTATGATAAGGGACCTGCACATTGCTAAGCAAGTAGAAGATATTGGATT
TTATGCTGGTTTTGTTGGTGCTTCATATATGCTTGGTAGAGCACTCACCTCTACAGTATG
GGGCATTGTGGCCGATAAGCATGGGAGGAAACCCGTTCTTGTAATTACCCTTATTGCAGT
AATTACCTTGAATACACTATTTGGACTCAGCTCCAGTTATTGGATGGCATTAACCACAAG
AGGTTTCCTTGGGTTGTTGTCTGGTATGCTTGGGCCAATTAAGGCTTATGCTACAGAAGT
ATGCCGGAAAGAATACAGTCACCTCGCATTATCACTTATTTCTTCCTCACGTGCCATAGG
CCTTATTGTTGGTCCAGCCATTGGTGGTTATCTTGCACAGCCAGCAGATAAATATCCAGG
CATGTTCTCTCA

Homology of Contig U35_7701 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16260.3	366	1e-97	protein\|major facilitator superfamily antiporter, putative, expressed
Brachypodium v1_2	Bradi2g10027.1	472	6e-103
Arabidopsis v10	AT3G43790.3	484	1e-69	\| Symbols: ZIFL2 \| zinc induced facilitator-like 2 \| chr3:15655443-15658848 FORWARD LENGTH=484