barSeed - Barley Seed Development Database

Probe CUST_42148_PI390587928

Source Contig U35_7707

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42148_PI390587928	Hv_44K_v2	TACATCATTCAGTGGTCCAAGTCAGGGTACTAGCTTTGACAAGAATGGCTTGGAAATTAA	1144	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.016	1.066	1.533	1.581	0.651	0.596
Raw	47.377	70.337	96.635	154.280	22.692	23.151

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363883	3794	2e-24	2562 - 2621	100	60 / 60	plus	ABC35484
MLOC	MLOC_54494.1	3728	2e-24	1212 - 1271	100	60 / 60	minus	ABC35484
MLOC	MLOC_54494.2	3725	2e-24	1212 - 1271	100	60 / 60	minus	ABC35484
JLOC1	JLOC1_35078.2	3697	8e-25	2460 - 2519	100	60 / 60	plus
JLOC1	JLOC1_35078.1	3693	8e-25	2456 - 2515	100	60 / 60	plus
Harvest21	ABC16008	1204	3e-25	1145 - 1204	100	60 / 60	plus
Harvest35	U35_7707	1204	3e-25	1145 - 1204	100	60 / 60	plus

Contig Sequence (1204 bp)

>U35_7707 1204 Hv_44K_v2
AGAAGGGCATTTCTGACAACATTGGTGTACATCAAAAGCACACACTTCCATCTGGAGGTG
TTAGCTCTTCAACTGAATTGTTTTCCAAAATTCTGAAAGGAACTGAAGATTGGGAGGCTG
ATGCAATGGATAAGTACTCCATTGAGAAACAAGGCATGTCAAAAAATGGTGGTTCAGTTG
TGAAGGACAATTCAATATCAATCTTGGAAGAGTTCTTTGGCAACGCATTGTCAAAAGGTG
GTGGCACTTTACCGACATATGTTGAGAGTCAACAGCTGAATACTGGTGCTGATATGATGC
CCTCTTCCGTACCAGAATCATCCAAATTTGCTCGCTGGTTTCGTAATGAAGATCCAAAAC
CTTCATAGGACTTGCCATCAAAGAGCCTGCTCTCCATGATTGTGAACAATGACAAACCAG
GCCCACAAAACATAGCTCCTGGCCCAACTTTGTCTGATGGTGCTATTCAGAATTTATCAT
CAAAATTAACTACCGATAAAGTCGATGCTTCATCAAGGCTACTACCATTTCCATCTCCCG
CACCTCCTGGTGGTATCCAGGAACAGTACAGCCATCCTGGTATCCCAGAGCCAGCTCCAG
TTATGATGACATGTGAGGATCTTGAGCAGGCGATGCTGGCACAGGTTGCTAGCAATAGCA
GTTCTACTCAGAAGAGTGCTGTACAGAGGCATCAGGCTGTTTTGGATGAGCCAGCCCGCA
AGCAGAAAGTAGCTGTAGACAATCATGCATCACATCATCTTCTTTCATTATTACAGAAGG
GAACAAATAGCAAGGGATCATCTCCGTTTGGTTTCCACATAGGATCAACTGATGTAGCAC
AAAGTTCTAATGTAAATGCCATGACCAACGGTGGGATATATGGAACTGTTCCGACTAACA
AAACTGAAACTGTTCCGACTAACAAAACTGAAACTGTTCCTGCTTCAGGGAAGAGCGGGA
CCTTGGAAGCATTATTCGGGGCAGCATTTATGAATGAGCTCCATTCCAAGGATGCACCAG
TTTCTATTCGGGGATCTGCATCTAGTCATGAAGGATACTACCCTGGTGAAGAGGCTCTGC
CCTTCAACAGCAATGAAGGTGGAGATCCTTTTAAAGAACCAAGAACTGGAATAGAGTACA
GGAATACATCATTCAGTGGTCCAAGTCAGGGTACTAGCTTTGACAAGAATGGCTTGGAAA
TTAA

Homology of Contig U35_7707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01680.2	966	1e-138	protein\|expressed protein
Brachypodium v1_2	Bradi1g52110.1	1001	0.0
Arabidopsis v10	None