barSeed - Barley Seed Development Database

Probe CUST_42147_PI390587928

Source Contig U35_7708

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42147_PI390587928	Hv_44K_v2	TGTGTTATGCATGCGGGAGGAAACCAATGAATGTTTCTCGACGTCCCGTGGTTCAAAAAA	652	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.996	1.420	1.545	1.490	0.816	0.780
Raw	281.095	635.718	597.049	901.314	173.571	181.065

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37423.1	3855	2e-23	3765 - 3822	100	58 / 58	plus	ABC23391
JLOC1	JLOC1_24236.1	3780	1e-23	3602 - 3659	100	58 / 58	plus
Harvest21	ABC23391	553	3e-25	12 - 71	100	60 / 60	minus	ABC23391
Harvest35	U35_7708	723	3e-25	653 - 712	100	60 / 60	plus

Contig Sequence (723 bp)

>U35_7708 723 Hv_44K_v2
ACCCAGCACGTCCGCTTAAAGACACCAGCAGCCCCGCTCTTACGGTTAAGGCGACGTACA
ACGGAGACACTGTGCGGTTCAAGTTCTTGCCATCGATGGGTTGGTACAACCTGTTGGAAG
AAATAGCCAAGAGGTTCAAGCTGTCGACGGGGGTGTTCCAGCTCAAGTACAAGGACGACG
AGGATGAGTGGGTCATCATGGCGAATGACTCTGACCTTCAGGAGTGCGTCGACGTCATGG
ACTCGATGGGCACGCGCAATGTGAAGCTCCAGGTCCGGGATCTCCCGTGCTTCATCAGCA
GCTCGGGCAGCAGCACCTGCTTGCAGCTGGAAGGACACAATTCATGACACGGTGAGGAAG
TTTGGAAAAGGATCTCTGTTACTCCCCCCTCAACTGTACCATACTGCAGTAGGTGTAGTC
TACGCTGTGTAGCAACAGGGTTTGGTAGTCTGTACTGTACGCGTGTAGCGTGTTATGTAG
CGGCAACGGCGAAACAGGAAGTGTAGCGATCGTCGAGCAGGCAGGCACGATGTCGTGCCT
GCGACGAAACGGTGTCATGGAGGTCCCTGAGAGGATGTCATGACAATAACCTGTTGTCAT
GAGGGTCTGCAGCGCCTGGCTGCCAATGTGTATCGAAAACTCAACTCCTGGCTGTGTTAT
GCATGCGGGAGGAAACCAATGAATGTTTCTCGACGTCCCGTGGTTCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_7708 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41850.1	937	1e-57	protein\|NIN, putative, expressed
Brachypodium v1_2	Bradi5g23300.1	954	7e-54
Arabidopsis v10	None