barSeed - Barley Seed Development Database

Probe CUST_42145_PI390587928

Source Contig U35_18076

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42145_PI390587928	Hv_44K_v2	GTCTATGTTGTTGGGATTGCTGGTTCCTCGAAGCTTGCTGTTATCAGTTGAATGCTAAAC	721	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.102	1.116	1.802	1.107	0.728	0.575
Raw	200.670	290.646	439.857	385.605	98.605	86.642

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249827.1	3344	3e-22	713 - 772	98	59 / 60	plus	ABC07198 ABC49697
MLOC	MLOC_59946.2	1618	3e-22	707 - 766	98	59 / 60	minus	ABC07198
MLOC	MLOC_59946.1	1652	3e-22	741 - 800	98	59 / 60	minus	ABC07198
JLOC1	JLOC1_39053.3	1633	1e-22	799 - 858	98	59 / 60	plus
JLOC1	JLOC1_39053.2	1512	1e-22	699 - 758	98	59 / 60	plus
JLOC1	JLOC1_39053.1	1282	1e-22	679 - 738	98	59 / 60	plus
Harvest35	U35_18076	784	3e-25	722 - 781	100	60 / 60	plus

Contig Sequence (784 bp)

>U35_18076 784 Hv_44K_v2
AGAAAAGTTCGTCGTACCTCGCCCACAAATCCGCTATGACTCCAATCCCCGAGCCCGTGC
AGTAAACGACGCTACCCAGACGCCCCCCCCTCCTCCCTCCTCTCAGATCAGAGGTCGAAT
CCAAACCCCGTCGGCGATGGCGCTGCCGCCGCGCCAACTCCTCCTCGTCCTCCTCGGGTT
CCTTGTCGCTGTCTCTCTAGCTACCCTCGCCGCCGCTGTCTACGCAGATCAAGTCGGCCT
CGCTGACTGGCATCAGAAATACATAGGCAAAGTTAAGCAGGCAGTTTACCACACTCAGAA
GAGTGGGAGGAGGCGTGTTGTGGTCTTGACAGAGGAAAATGTGATCGCTTCTCTTGATCT
TCGTTCAGGAGATATATTTTGGCGACATGTCATTGAGAAGAATAACCCCATTGATCAGCT
TAGTCTATCAGCTGGAAAATATGTTGTTACCCTTTCTTCGGGAGGTAGTATATTGAGGGC
ATGGAATCTTCCTGATGGACAGATGGTCTGGGAAACCAATATTCAAACTTCCTCAGCATC
AAAGTCGTTGCTGCATGTTTTGTCAAACAGTAAAGTGGTACAAGATAATTTGGTTTTAGT
TTTGGCTGGACAATGGATTTATGCTATATCAAGCATTGATGGACTCATTTCTTGGGGAAA
GGAGTTCACACTTGACGGCCTAGAAATCAAGCAGGTTGTTCAATCACCTGAGAATGATAT
TGTCTATGTTGTTGGGATTGCTGGTTCCTCGAAGCTTGCTGTTATCAGTTGAATGCTAAA
CTGG

Homology of Contig U35_18076 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g14170.1	990	2e-101	protein\|expressed protein
Brachypodium v1_2	Bradi2g31830.1	990	2e-100
Arabidopsis v10	AT5G11560.1	982	2e-66	catalytics \| chr5:3709734-3713994 REVERSE LENGTH=982