- Probe CUST_42140_PI390587928
- Source Contig U35_44344
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42140_PI390587928 | Hv_44K_v2 | CCCGTATAAATCCTGAGAGGTTTAATTTTTGGTCACCGTTACATGTTCAAAAACCTAAAA | 119 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.311 | 0.643 | 2.279 | 2.438 | 1.099 | 1.080 |
| Raw | 13.686 | 44.789 | 139.756 | 226.386 | 37.346 | 39.905 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC41983 | 383 | 3e-25 | 120 - 179 | 100 | 60 / 60 | minus | ABC41983 |
| Harvest35 | U35_44344 | 383 | 3e-25 | 120 - 179 | 100 | 60 / 60 | minus |
Contig Sequence (383 bp)
>U35_44344 383 Hv_44K_v2 TTTTTTTTTTTTTTTTTCAGCCCCAACACCAACATTCTAACACAAAAACTTTTATTTGAA CAAAAAAAAAATTTAAAACGGGAAAAAGGAGGACAAAAAAAAGGAGGAAAAAAAAATTTT TTTAGGTTTTTGAACATGTAACGGTGACCAAAAATTAAACCTCTCAGGATTTATACGGGT CGGCAAAAAAAGGAAAAAAATTTTTGTAGTAAAGTAATATTCTGTTTGCGGTTGGTTACC GGGCCGGCTCCACGGGGGCGGGGCCGTAAAGGTCAAACGGCCCCCAAAGCGCTTCCAGCG GGCACGGCCGCCCGCCGCCCAGCCGCCCCCACGGTTTGCCGGACCCCGACCAATGCAGCA GGCTCACCGGCCCCGGGTGGAGG
Homology of Contig U35_44344 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |