barSeed - Barley Seed Development Database

Probe CUST_42134_PI390587928

Source Contig U35_20391

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42134_PI390587928	Hv_44K_v2	TCTTTCCATCTTCAGTCCCTTGGGAGGACTGTCACTAAGAATAATAGCGTGAAGTATGCG	1129	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249886.1	2133	2e-24	1168 - 1227	100	60 / 60	plus	ABC13058
MLOC	AK365842	2139	2e-24	263 - 322	100	60 / 60	minus	ABC02247 ABC02250
MLOC	MLOC_79403.1	725	2e-24	206 - 265	100	60 / 60	minus	None
JLOC1	JLOC1_52892.1	669	8e-25	407 - 466	100	60 / 60	plus
Harvest21	ABC13398	1156	3e-25	1092 - 1151	100	60 / 60	plus
Harvest35	U35_20391	1194	3e-25	1130 - 1189	100	60 / 60	plus

Contig Sequence (1194 bp)

>U35_20391 1194 Hv_44K_v2
CTCGCCGCCGCCGCCGCCGCCGCCATATACCTCACCTCCGAACTCCGTGCCGCTGAGCGC
TAGCGTCCGTCCTTTCTCGCCGAACCTCGTCCTCCTCACCGCGGGCTGCTAATTTCCCTT
GGATTCCGTGGTTGGGTTTGGATTTGTAGACATGGGGGACCTGGAGGACAAGCTCAAGGG
CTTTGAGATCAAGAAGGAAGGCGAGGCTGAGATCCTCATGCTCAATAGTAACGCCGTGTT
CTTCAATCCCGTGCAGGTGCACAACAGAGACATGTCCATTGCTGTGTTAAGGACATTTGT
TGCCAAGCGCAAGGAAGAACATGAGGAACTGATGAATAAAAGGAATAATAAGTCGCATAA
AAAAGGCAATCAGATTGAAACACCTGTTGTAAATGGAGACACTGCTTTAACTCAGCATGA
TGAAACCGATGTTGTTCATGAAAAGGAGCCAAATCAGGCTACAAATGAAATAGAAGATCC
GTCAAAAGAAGAAACGAAGACACCTTCCGGGAAAGTAACCAGAGAGCTTAAGCCACCAAT
TGTTCTTGAGGCGTTAGCTGCTTCTGGGTTGAGGTCTCTCCGTTATGCTCGTGAAGTTGA
TGGATTAGGAAAGGTAGTTGCTCTGGACAATGATAAAGCTTCTGTTGAAGCTTGCAAGAG
GAACATCAAGTTCAATGGGGCTTCTGTTATTAGCAAGGTGGAAGCTCACTTGGCTGATGC
TCGAGTTTACATGCTCACTCATCCAAAAGAATTTGATGTGGTTGATCTTGACCCCTATGG
GTCACCATCTGTATTCCTCGACTCAGCTGTACAGGCTGTTGCTGATGGTGGACTATTAAT
GTGTACAGCCACTGATCTGGCAGTACTTTGTGGAACCAATGGAGAAGTTTGCTACTCCAA
GTATGGTTCCTACCCAGTCAGAGGCAAGTATTGCCATGAAATGGCTTTGAGAATCCTCCT
TGCCAGTATCGAGAGCCATGCAAATCGGTATAAGAGATATATTGTGCCTGTTCTCTCTGT
GTTTATGGATTTCTATGTCCGTGTGTTTGTTCGAGTATTCACTTCTGCAAGTGAAATAAA
GAATGCTCCACTTAAACTTTCTTATGTATATCAATGTGTCGGCTGTGATTCTTTCCATCT
TCAGTCCCTTGGGAGGACTGTCACTAAGAATAATAGCGTGAAGTATGCGCCTGG

Homology of Contig U35_20391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57280.1	609	4e-180	protein\|N-dimethylguanosine tRNA methyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g66740.1	602	0.0
Arabidopsis v10	AT5G15810.1	691	2e-160	N2,N2-dimethylguanosine tRNA methyltransferase \| chr5:5157798-5161121 FORWARD LENGTH=691