barSeed - Barley Seed Development Database

Probe CUST_42133_PI390587928

Source Contig U35_20392

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42133_PI390587928	Hv_44K_v2	TGGTTCATGTTGTCCAGTTGAATGCTTGTTGAAGATAGAGCTATGGTTCGATGTGTGGTT	1601	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357535	1383	2e-24	1251 - 1310	100	60 / 60	plus	ABC14361
Harvest21	ABC14361	1661	3e-25	1602 - 1661	100	60 / 60	plus	ABC14361
Harvest35	U35_20392	1661	3e-25	1602 - 1661	100	60 / 60	plus

Contig Sequence (1661 bp)

>U35_20392 1661 Hv_44K_v2
GCGTCACTCCAGTTACAAGCCGGTCATCATGCGGCCAGTTGGAGAATTTTGAATTTCACG
CGGTTAGATCAACCCGAGGAACACCTGCGGGATCTCACTGGATCTCCGTCTCCTCGTCTC
AGCTCGAAGCCGATCATCATGCTGCCGGTTTACATTTCAGTGTGATTCAGAACCCATGTT
TTTTTTGAGAAGAGCAGCTTGTTTCTTCTTTGTGACTTGTTAGCCCAAGCACACTATACT
GGGCCAGATGTTTTTTCCCTATAGAATGGGTCCAATGCAGCCCATCCAAACAGTGAAAAG
CTGAGGTGGGTAGTCAGTCAGCGCACGATTCGTCAAAGCGAGTTTTCCCTGGAGAAAACT
CTCGCCGCTGCGAGTTCCCGAAAAGCGAAGCGACCACCACACCCCTCGCCGGAGATGCCG
CCGGGGACCTCTCCGCCGCCGACGGAGACGTGGACATGGGAGAACGCCGTCGCCGGAGCG
ACCGCCGGCTTCGCCACCGTCGCGACCTTCCACCCGCTCGACGTCGTCCGGACCCGCTTC
CAAGTGAGCGGCGGGAGAGGGTTGTCCGACTTGCCGCCGTACAGGAACACGGGACACGCT
GTGTACACCATCGCACGATCTGAGGGCCTGAGGGGACTCTATGCCGGCTTTTATCCTGCA
GTTCTGGGATCAACCGTTTCTTGGGGACTATATTTCTATTTTTACAACAGAGCTAAACAA
AGATACTTGCAGGACAAGGATGTTCAGCTCCGTCCATTCTACCATCTTGCCTCAGCTGCA
GAAGCAGGCGCTTTGGTTTGCCTGTTTACCAATCCGATATGGCTGGTGAAAACACGGATG
CAACTACAAACACCCGGGCATACTTCATCTTATTCTGGATTTTCTGCCAGATGCTCTGAG
AACTATTCTGAAAGAGGAGGGATGGCGAGCACTTTATAGAGGGATTGGGCCTGGACTTCT
GCTGGTCACCCATGGCGCGATACAATTCACGGCCTATGAGGAACTTCGCAAGGCTATGAT
ATTTGCCAGAAGTAAACAAACAAGGGGAGATGACAAAGGCAGCGAGGATTTATTGAATTC
TGTTGATTATGCGGCACTTGGCGCTGGTTCAAAATTATCTGCCATTCTTCTTACTTATCC
TTATCAGGTTATCCGAGCCCGCCTACAGCAACGGCCTGGTAGTGATGGTATCCCAAAGTA
CTCAGACAGTTGGCATGTAGTGAAGGAAACTGCAAGGTACGAAGGTGTCCGTGGGTTTTA
CCGAGGCATCACGTCCAACCTGTTGAAGAACCTTCCAGCGGCTTCTGTGACGTTTGTGGT
GTATGAAAATGTCATCAAACTATTCAGAGCAGCCAAGGAGAAGACGTAGTTCCAACTTGC
AACTGGAGCCAGGAGAAACATAGGAGGAAATAGGAAAGATACTACTGTTCCATTCAAATA
CATAATCTGTTCATTCACCACACTGTCCGAGCTCGACGTGATGTTCCATCACATTTCCCA
GTTCAGCTCTTATTCATTTAACACAAATGGAATTTAGTTTGGCGAACTTGTTTTCTGTAG
AGAAAATTCATTTTCTGTTTCTTCACGAAGAGATAGCTCATTGGTTCATGTTGTCCAGTT
GAATGCTTGTTGAAGATAGAGCTATGGTTCGATGTGTGGTT

Homology of Contig U35_20392 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52430.1	319	1e-90	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi1g09560.1	317	4e-93
Arabidopsis v10	AT5G66380.1	308	1e-105	\| Symbols: ATFOLT1, FOLT1 \| folate transporter 1 \| chr5:26513645-26515533 REVERSE LENGTH=308