- Probe CUST_42131_PI390587928
- Source Contig U35_20394
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42131_PI390587928 | Hv_44K_v2 | CTTCTTCTGCGGCAGCCATGCATCATCCTGAAATATTTAGCAAACATGATATGGAGGTGA | 631 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5857.3 | 1323 | 2e-24 | 655 - 714 | 100 | 60 / 60 | plus | ABC14798 |
| MLOC | MLOC_5857.2 | 2177 | 2e-24 | 1168 - 1227 | 100 | 60 / 60 | minus | ABC14798 |
| MLOC | MLOC_5857.4 | 1387 | 2e-24 | 530 - 589 | 100 | 60 / 60 | minus | ABC14798 |
| MLOC | MLOC_5856.6 | 8032 | 2e-24 | 7129 - 7188 | 100 | 60 / 60 | minus | ABC14798 |
| MLOC | MLOC_5857.5 | 1002 | 2e-24 | 31 - 90 | 100 | 60 / 60 | minus | ABC14798 |
| MLOC | MLOC_5857.1 | 2933 | 2e-24 | 1771 - 1830 | 100 | 60 / 60 | minus | ABC14798 |
| MLOC | MLOC_5856.4 | 7747 | 2e-24 | 6796 - 6855 | 100 | 60 / 60 | minus | ABC14798 |
| JLOC1 | JLOC1_3795.2 | 1821 | 8e-25 | 843 - 902 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3794.1 | 2166 | 8e-25 | 1236 - 1295 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_3795.1 | 1710 | 8e-25 | 732 - 791 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14798 | 1314 | 3e-25 | 632 - 691 | 100 | 60 / 60 | plus | ABC14798 |
| Harvest35 | U35_20394 | 691 | 3e-25 | 632 - 691 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20393 | 1362 | 3e-25 | 680 - 739 | 100 | 60 / 60 | plus |
Contig Sequence (691 bp)
>U35_20394 691 Hv_44K_v2 AGATTGCTCGTCGTTCTTCCAGTGGTGCTGCTTGGTTTGGCCTTCCAGGCCATTCTCCAG CCACCACCTACAAAACGTTGCGGCTCGGCAGGTGGACCTCCTGTGACATCTCCCAGGATC AAACTCAGGGATGGCAGGTACCTCGCATACCGGGAAGACGGTGTGCAGAAGGACAAGGCC AAGTACAAGGTCATCACAGTGCATGCATTTGATAGCACCAAGGACTTCCCCTCACCTGTT TCGAAGGAGCTTGTGGAAGAACTCGAAATTTACCTCCTTGCATTTGATAGAGCAGGGTAC GGGGAAAGTGACCCAAACCCCGGACGGAGCGTCAAAAGTGAAGCGTTGGATATAGAGGAG CTCGCCGACCAGCTGGAGCTTGGACAGAAGTTCCATGTCTTGGGTGTCTCCATGGGAGGA TACACAGTCTGGGGTTGCCTCCAGTATATACCTCACAGGCTGGCAGGAGCCACGCTAGTT GTACCAGTTATCAATTACTGGTGGCCTTCTTTCCCACCAGAGGTGTCCAGGCAGGCTTTC AAGAAGCTCATTGTACCAGAGCAGAGGACCCTCTGGATCGCACACAATGTACCTTACTTG TTATACTTGTGGATGACCCAGAAATGGCTCCCTTCTTCTGCGGCAGCCATGCATCATCCT GAAATATTTAGCAAACATGATATGGAGGTGA
Homology of Contig U35_20394 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g05600.1 | 344 | 2e-137 | protein|hydrolase, alpha/beta fold family protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g42337.1 | 348 | 1e-145 | |
| Arabidopsis v10 | AT5G22460.1 | 340 | 2e-84 | alpha/beta-Hydrolases superfamily protein | chr5:7443659-7445269 REVERSE LENGTH=340 |