barSeed - Barley Seed Development Database

Probe CUST_42124_PI390587928

Source Contig U35_32371

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42124_PI390587928	Hv_44K_v2	TGTTCAAAGCGTTTCTTGACCACTAAGGTTGACAGATGTGTGACAGGTTCTTGTGGCACA	261	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73858.1	4942	3e-22	2444 - 2502	98	59 / 60	plus	ABC16509 ABC16521 ABC17771
JLOC1	JLOC1_49194.1	5049	1e-22	2467 - 2525	98	59 / 60	plus
JLOC1	JLOC1_46161.2	4834	6e-21	2394 - 2452	97	58 / 60	plus
JLOC1	JLOC1_46161.1	5238	6e-21	2798 - 2856	97	58 / 60	plus
Harvest35	U35_32371	366	3e-25	262 - 321	100	60 / 60	plus

Contig Sequence (366 bp)

>U35_32371 366 Hv_44K_v2
GTTTCAATGGCTGTCCTTGGTGAAATTGATGGTAGTGGAAAGATTGTTTTAATAGACAGT
GCTGCTGTGGAGCATGCATTGTTGAGTGGCCTTCCTCCTCCACCGCCTGCTGTTGATCTT
GAGCTTGAAAAGGTTTTAGGAGATATGCCTCAGAAGACCTTTGATTTCAAGCGAGTTCCT
CGATTGAGTGAGCCCTTAGACATAGCACCCGAGATTACACTGATGGATGTTCTTAAGAGA
GTATTGAAGCTTCCCTCAGTATGTTCAAAGCGTTTCTTGACCACTAAGGTTGACAGATGT
GTGACAGGTTCTTGTGGCACAACAGCAGACGGTTGGACCTATGCTCTTCCAATTGCTGAT
GTTGCT

Homology of Contig U35_32371 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g28650.1	740	5e-52
Arabidopsis v10	None