barSeed - Barley Seed Development Database

Probe CUST_42120_PI390587928

Source Contig U35_18081

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42120_PI390587928	Hv_44K_v2	TCAACTACAAATCTGGCTAGTATTATTATCCTGTTGCCACTCTTGAGAATTAATGAGTTG	1621	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.516	1.392	1.076	0.812	0.365	0.305
Raw	8877.900	12456.080	8683.723	10069.647	1615.253	1473.257

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371348	1704	2e-24	1630 - 1689	100	60 / 60	plus	ABC08192 ABC32434
MLOC	MLOC_14683.5	1332	2e-24	1267 - 1326	100	60 / 60	plus	ABC08192 ABC32434
MLOC	MLOC_14683.1	1523	2e-24	1438 - 1497	100	60 / 60	plus	ABC08192 ABC32434
MLOC	MLOC_14683.2	1520	2e-24	1435 - 1494	100	60 / 60	plus	ABC08192 ABC32434
JLOC1	JLOC1_10025.3	1559	8e-25	1382 - 1441	100	60 / 60	plus
JLOC1	JLOC1_10025.2	1452	8e-25	1275 - 1334	100	60 / 60	plus
JLOC1	JLOC1_10025.1	1455	8e-25	1278 - 1337	100	60 / 60	plus
Harvest21	ABC32434	369	3e-25	278 - 337	100	60 / 60	plus	ABC32434
Harvest21	ABC08192	1713	3e-25	1622 - 1681	100	60 / 60	plus	ABC08192
Harvest35	U35_18081	1713	3e-25	1622 - 1681	100	60 / 60	plus

Contig Sequence (1713 bp)

>U35_18081 1713 Hv_44K_v2
GCCCTAGCTCGCGCTCCAGACCCCGCACGCCCGCCGCCGCCGCCGCCGCGGGGAGACGGA
CGACGATGGCGAAGCCCCGCCGCGGCCGCTCAGGCTCGCGGTCCTCGTCGGGCTCCTCCT
CCCGCTCCGCCTCCTCGGGCTCCTCCCGCTCGCGCTCGCGCTCCCGCTCCCGCTCCCTCT
CCTCCTCCTCGTCCTCGCCCGCCCGCACCCGGGGCCGCTCCCCTCCCGCCGCCAAGCGCA
GTTCACCTGGAGCAAAGAAAGGGCGATCACCTTCACCCCCTCTCAAAAAAGGGTCACCAT
CAAGGAAAGGCCGCTCAGCATCTCCCCCACCGAAGAAAGCTTCACCTCCTAGGAAAGCAT
CTCCCCCTCCTCAGTCGGTTGTTCTACACGTTGATCATCTATCCAGAAATGTGAATGAGG
CTCATTTGAAGGAGATATTTGGAAGTTATGGCGAAGTGGTGAATGTGGAGCTATCAATGG
ACAAATTTGTTAATCTCCCTCGTGGGTATGGATACATCGAGTTCAAGAAGAGGACTGATG
CTGAGAAGGCTCTTCTTTACATGGATGGTGGGCAAATTGATGGAAATGTTGTCAAGCTGA
AGTTCACACTGCCACCACGCCAAAAGGCTTCTTCACCTTTAAAGCCACCTCCTCCTCCCC
CCAGAAGAGATGCTCCTCAGAATGATAAAGTTGCTATTGGTGCTGAAAAGGATGCGCAGC
AGCGCCCTGGGGGATCATCTCCACGAAAGAAGCCACCTTCTCCTCCGCGAAAGAGGTCTC
CTCCAAATAGAAGGGCTGAGTCACCCCGGCGTCCACCCAATCCATCTCCAAGGCGTCGTG
CTGATTCTCCTATTCGTCGTCGACCAGATCTTTCCCCTGTTAGGCGTGGTGACAGAAGAC
CAGGATCTCCAATTAGAAGACGTTCCCCTTCACCTAGAAGGCATAGGTCACCAATGCGGA
GGGGTCGTGGCAGCTTATCACCTCGCAGACGCTCCCCGGGGCCTCCTAGGCGCTCACCTG
GGCCTCCCAGACGGCGGTCACCACCACCAAGGAGATTGAGGAGTCCTCCAAGAAGGCCAC
CACCACCACCTCCCCGTCGTCACAGTCGCTCCCCTCCTCCTCGCCGCCCTCTTCACTCCC
GCTCTAGATCGATTTCTCCTCGCAGGGGGCGAGGACCACCATTGAGGCGTGGAAGGTCAG
ATTCATCATATTCTGCATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTGTCAAGGA
GCCGCAGCCCTAGAAGGCCTCCCAGAGGAAGGAGCGGATCTAGCGACAGCGGGAGCAGCA
GCTCTTCCCCAACCCCAAGGCGCAGGTAGAAAGAAAGAAACTCGTAACGTGTGTTGTTCC
TGGCAGGTAAAAAACTTTCTCTTCTCTCTCGACTGTCACCATGGATTGCGTCTGCATGCA
TGTATCTTGCTGTGAGCTCAAGTCAAGAGGCGATCGATGTGAGGGGCGGGACGATGCGAT
GAGGTGCTCGGCATGCCTCCCTGGCATTTGTACTCACAAGACAGACTGTATGATGACGAC
TTGTGTTGATGATTTGCCTGTACTGGAACTATTTTTTTTTTTATAATTCTGCGGTTGTTT
GTCAACTACAAATCTGGCTAGTATTATTATCCTGTTGCCACTCTTGAGAATTAATGAGTT
GTTTACTAGTTGATTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18081 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None