barSeed - Barley Seed Development Database

Probe CUST_4211_PI390587928

Source Contig U35_43474

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4211_PI390587928	Hv_44K_v2	GAAAGGTTCGACGGATGATGGAGCAAAGTAAGCAGGGATCTTTGGGAATGTAAATTGTGT	353	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.472	6.442	1.322	0.766	0.252	0.422
Raw	326.083	1403.504	230.955	232.150	24.595	45.128

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75223.2	3232	2e-24	3044 - 3103	100	60 / 60	plus	ABC09110 ABC09111
MLOC	MLOC_75223.1	1260	2e-24	1060 - 1119	100	60 / 60	plus	ABC09110 ABC09111
MLOC	MLOC_75223.3	443	2e-24	239 - 298	100	60 / 60	plus	ABC09110 ABC09111
JLOC1	JLOC1_50174.1	1461	8e-25	1016 - 1075	100	60 / 60	plus
Harvest21	ABC09111	512	3e-25	354 - 413	100	60 / 60	plus	ABC09111
Harvest21	ABC09110	1235	3e-25	935 - 994	100	60 / 60	plus	ABC09110
Harvest35	U35_43474	413	3e-25	354 - 413	100	60 / 60	plus
Harvest35	U35_3469	1261	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (413 bp)

>U35_43474 413 Hv_44K_v2
CTCAAGAAGACTGAGCACTTTCGCCGCCCGGATCTCTTGTTCATCGCCCTCTCCGCTCTT
GGACTCGCTCGCCGCCGCCGCCGCCATCCATGGCTAAGCAGCAGAAGAACGCGCACGTCC
CGAAGTTCGGCAACTGGGACAACGACGGCAACGTGCCCTACACGCTCTACTTCGACAACG
CGCGCAAGGGCAAGGGCGGCAAGCCCATGAACCCCAACGACCCCGTCGAGAAGAGCACCC
AGGCCAAGGCGCCGGGGTTCGGCAAGGACAACGTCGCCTATGGCAAAGGCGCCAGGCAGC
ACGACGACGGCTACGTCTCCTCGAGTCGCTGGTGCTTTGGGTGGTGCAAGTAGGAAAGGT
TCGACGGATGATGGAGCAAAGTAAGCAGGGATCTTTGGGAATGTAAATTGTGT

Homology of Contig U35_43474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None