barSeed - Barley Seed Development Database

Probe CUST_42119_PI390587928

Source Contig U35_18082

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42119_PI390587928	Hv_44K_v2	AAAGAGTTTTGTTATGTATCAGGCTCTGTCTAACGCTATCTTGTTTCCCCTTTACTATTT	1868	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.560	2.424	1.267	0.736	0.277	0.359
Raw	361.732	518.304	244.489	221.214	30.225	42.234

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376303	2009	2e-24	1943 - 2002	100	60 / 60	plus	ABC09151
MLOC	AK362013	2130	2e-24	1875 - 1934	100	60 / 60	plus	ABC09151
MLOC	MLOC_13467.1	1654	2e-24	1566 - 1625	100	60 / 60	plus	ABC09151
JLOC1	JLOC1_9122.2	1078	8e-25	801 - 860	100	60 / 60	plus
JLOC1	JLOC1_9122.1	1532	8e-25	1255 - 1314	100	60 / 60	plus
Harvest21	ABC09151	1938	3e-25	1869 - 1928	100	60 / 60	plus	ABC09151
Harvest35	U35_18082	1938	3e-25	1869 - 1928	100	60 / 60	plus

Contig Sequence (1938 bp)

>U35_18082 1938 Hv_44K_v2
GATCAAGCACGCCCCTCCTCCCACTTCCCCAATCTCCCGAGCCTTCTTTCTCCTCGCCAA
TCGCGTCCCAAACCCCCCACCCACCCTGCGCGGATCGATCCCCCTGCCGACCGACTGCGC
AGCGGCAGCCGCGGCCGCGTCCGCGCCTTCCTCCCCGCCGATTCAGCCGACCGATCGCGG
CAGCCCTCGCCCACCCATGCTTCTCCGGGCGGCTGCGGACGAGATATGAGCCGGCGGGGA
ATCGCCGGAGCCGCTCACGCCGCCCGCCATGGACCCCTCCGAGCGCCCCGCCGTCGTGTT
CGACAACGGCACAGGGTATAGCAAACTTGGGTTTGCTGGTAACTCCGAGCCGTCTTTCAC
CATCCCTACTGTAGTAGCTGTGAATGAATCTTTCTTGGACCAATCAGAGCAGTGCAGTAG
TGCAAATTGGTTAGCACAGTATAATGCAGGTGTCATGGCTGATCTTGATTTTTTTATCGG
GGACGAGGCTCTGTCACATTTCAAATCTAGTGGCCTGTACAGTTTAAGAAGCCCAATTCG
CCATGGTCAGGTGAATGACTGGGATACAATGGAGAGATTTTGGCAGCAATCCATTTTCAA
TTATCTACGCTGCAATCCTGAGGAACACTACTTCCTACTTACAGATAGTCCTGTCAGTAC
GCCTGAAAGTCGTGAATGTATGGGAGAAATTATGTTTGAGACCTTTAATGTCCCTGGTCT
ATATATTTCTGTGCAATCTGTGCTCAGCCTTTCTGCTGGATTTGCATATCTGAAAACCCT
TTCTGAAGATGATTCAGATTCTGTGTCTGATATGACAGGTGTAGTAGTTGACATTGGGGA
TGGAGCTCCACATATCGTGCCAGTTGTAAACGGCTATGTAATTGGGAGTAGCATAAAGTC
TTTTCCTCTTTCCGGAAGTGATGTAACTCAGTTTGTTATGCAGCTCTTACAGGAAAGGGG
CGAGCTTCTTCCACCTGATGATGCTTTGGATATAGCTCGTAGGGTGAAAGAAACATATTG
CTATACTCCTTCAGACATTGTCAAGGAGTTCAAGAAGCATGACAGCAAGCCTAGTAAATA
TATCAAACAATGGTCTGCAATCAAACCGAAGACTGGGGTTCCATACACAATTGACATTGG
ATATGAGCGTTTTCTTGGACCAGAGATCTTCTTCCATCCTGAGATGTATTCGGCTGACTT
CTCCACTCCTTTACCTGAACTGATTGACAGCTGTGTTCAATCTGCCCCAATTGACACAAG
GAGAGCTTTGTATAAGAACATAGTATTATCTGGTGGAACTACCATGTTTAAAGACTTCCA
CAAAAGGCTCCAAAATAATATAAAGAAGATAGTAGACGAACGTGTTGCCGAAACTAATGC
TCGTCATCGTGTGGAGGTTAATCCTGTTGAGGTCAATGTAGTCACCCATCCTATACAGAG
CTACGCAGTTTGGTTCGGGGGTTCTGTAGCTGCATCCAGCCATGAATTCTTCGAGTGTTG
CCACACAAAGGAAGATTACGAGGAGCATGGAGCAAGCATCTGCCGAACAAGCACCGTTTT
CAAAGGAATGTACTGAAGTTTTGACGTATCCAACGTTTTTTTGTAGGAGCTTTACTAGGT
TTCTTCAAATAGAATAGAGTCAAAATTGATTCTCCTTTCGGCTCGTCTCAACCATCACTG
GGCCGATAGATTTGTAGCTGAATATGTAGCTCTCTCTGTTCTGTACGACATGTTGTGTAT
AGTCAGCAATTCTCTTCCTGTTCCAGGTGCATGTTTGTTTGTAGCCAGTTGTGTTGTTAA
GCAGAAAGATGTTTCCCCCCTTGTTTTCTTGTTTTTTCGACTAGACTAGAATAGATAGAG
AGTTGCTGAAAGAGTTTTGTTATGTATCAGGCTCTGTCTAACGCTATCTTGTTTCCCCTT
TACTATTTTTTTGCTACG

Homology of Contig U35_18082 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g03440.1	436	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi3g14230.1	436
Arabidopsis v10	AT1G13180.1	427	\| Symbols: DIS1, ARP3, ATARP3 \| Actin-like ATPase superfamily protein \| chr1:4495394-4498204 FORWARD LENGTH=427