barSeed - Barley Seed Development Database

Probe CUST_42113_PI390587928

Source Contig U35_32379

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42113_PI390587928	Hv_44K_v2	ACCAGGTTTTAGTGAAGAGTCTTAAGAATGAGATTGTGAAGAAAAGCCCTCTTCCTATTG	391	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.010	0.916	1.487	1.098	0.833	0.734
Raw	41.365	52.153	82.731	81.718	24.227	24.766

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29110.3	2298	2e-23	338 - 395	100	58 / 58	plus	ABC09290
MLOC	MLOC_29110.2	4344	2e-23	1389 - 1446	100	58 / 58	plus	ABC09290
MLOC	MLOC_29110.1	6672	2e-23	1581 - 1638	100	58 / 58	plus	ABC09290 ABC10354 ABC13170 ABC13171
JLOC1	JLOC1_19422.1	4470	1e-23	1572 - 1629	100	58 / 58	plus
Harvest35	U35_32379	494	3e-25	392 - 451	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_32379 494 Hv_44K_v2
AGCAGCTTAAGCAGGACACACATCTTCTTCCCCTCCGAGATCCAAATCACCAAACTGACA
GCTTTCGCCGTTAGTGGTAATACAGTGTTCTATGTGAAGGACCGCTTCCTCCGTTTCTAT
GAGTACTCAACACAGAAGGAGGTCCAGGTGGCTCCGATAAGAAGGCCTGGGTCAGTCAGC
TTGAATCAATCACCAAGGACATTATCATATAGCCCAACTGAGAACGCTGTCTTGATCTGC
TCTGATGTGGATGGGGGCTCATATGAGCTCTTCATTGTTCCTAAAGATTCTGCTGGCAGG
GCCGATTATTTGCAGGATGCGAAGAAGGGATCTGGCGGTTCTGCAGTTTTCATAGCCCGG
AACCGGTTTGCAGTCCTGGAGAAGAGCAGCAACCAGGTTTTAGTGAAGAGTCTTAAGAAT
GAGATTGTGAAGAAAAGCCCTCTTCCTATTGNCACTGATGTTATTTACTATGCTGGAACT
GGTACATATTGTGC

Homology of Contig U35_32379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50340.1	1219	3e-80	protein\|coatomer alpha subunit, putative, expressed
Brachypodium v1_2	Bradi1g78470.1	1219	1e-83
Arabidopsis v10	AT1G62020.1	1216	2e-72	Coatomer, alpha subunit \| chr1:22919814-22923728 FORWARD LENGTH=1216