barSeed - Barley Seed Development Database

Probe CUST_42104_PI390587928

Source Contig U35_44357

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42104_PI390587928	Hv_44K_v2	TTACATTCTACGTGGATGGAAAACCTATTGAAGCTCATCGGGTCATCCTTTGTGCCCGAT	579	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.051	2.072	1.222	0.783	0.574	0.552
Raw	44.856	44.236	24.019	24.297	4.991	6.639

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71683.1	2246	2e-24	623 - 682	100	60 / 60	plus	None
MLOC	MLOC_71683.2	1619	2e-24	1305 - 1364	100	60 / 60	minus	None
MLOC	MLOC_71683.3	2117	2e-24	1379 - 1438	100	60 / 60	minus	None
MLOC	MLOC_71683.4	1360	2e-24	1251 - 1310	100	60 / 60	minus	None
JLOC1	JLOC1_47657.1	2102	8e-25	692 - 751	100	60 / 60	plus
Harvest21	ABC41998	657	3e-25	580 - 639	100	60 / 60	plus
Harvest35	U35_44357	657	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_44357 657 Hv_44K_v2
AAAAGGAAACAAAAGTCCCCCCGGAAGAGATGGTGTACGCGCCGCCGCCCGACGGCATGG
GCCTGGAGATCGACCACGACCTGGACCCGGAGGACCTCCACCCGACGGTGCCCCTGAAGA
AGGTCCCCGCGGGGGACCTCTTCGAGGCGGCGCGCGCCGGCGACTGCGACCGCCTGGCGC
TCCTCCTCGAGGCCGGCGCCAACGTCAACGCGCGCGACCGCTGGGACTCGGTCGCGCTCT
ACTACGCCTGCCTCGCCGGCCACGCCGATGCCGCGCGGATGCTGCTCGAGGCCGGGACCG
TCTGCGCCGAGCGCACCTTCGACGGCGACCGCTGCCACTACGCCGCGCTCAACCTCGACC
TCCGCAGGCTCCTCACGTCCTTCGAGGCGCGCCCGCCCCCGCTCGCGCCGCTGCCCGCCG
CGCTGCGGACCACCTTCCTCGCCTGTCCCGCCAACCGCGCCGCCTACCTCGAGATGTTGC
TCCAGGACGGCGCCACCGCCGAAGCCGCTGCCCTCGCTGAAGCCGAAGGATTTGGGCCAA
CAGATGATGCATCAACTGGCAGTCTGTTCCCCCCGGATATTACATTCTACGTGGATGGAA
AACCTATTGAAGCTCATCGGGTCATCCTTTGTGCCCGATCGCCCTTCTTTGAAAAGA

Homology of Contig U35_44357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g21330.1	586	1e-88	protein\|ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed
Brachypodium v1_2	Bradi1g42730.1	588	3e-91
Arabidopsis v10	AT2G04740.1	578	1e-60	ankyrin repeat family protein \| chr2:1657137-1659563 FORWARD LENGTH=578