barSeed - Barley Seed Development Database

Probe CUST_42100_PI390587928

Source Contig U35_32384

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42100_PI390587928	Hv_44K_v2	TAAATGGAAAAGGACGGTTTTATCGTGGATGATAGATCTGGGGGTGGTTTCACAAGATGC	339	GeneList: brown MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.864	1.676	1.257	0.737	0.474	0.435
Raw	1391.430	1809.809	1280.463	1022.622	267.063	263.978

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17175.1	3219	2e-24	699 - 758	100	60 / 60	minus	None
MLOC	MLOC_17175.2	3231	2e-24	725 - 784	100	60 / 60	minus	None
MLOC	MLOC_17175.3	3115	2e-24	608 - 667	100	60 / 60	minus	None
MLOC	MLOC_17175.4	3090	2e-24	576 - 635	100	60 / 60	minus	None
JLOC1	JLOC1_11857.2	3103	8e-25	2449 - 2508	100	60 / 60	plus
JLOC1	JLOC1_11857.1	3088	8e-25	2449 - 2508	100	60 / 60	plus
Harvest35	U35_32384	453	3e-25	340 - 399	100	60 / 60	plus

Contig Sequence (453 bp)

>U35_32384 453 Hv_44K_v2
GGCTTATGCAGTGTTCCAAGAGCACGTGAAAAGTTCACAGGATGAGAACCATACAGGTCA
ACCAGGTGTTGCAGATGCTTCCTTTGATGCCATATCAAAAGAGGATCTAGCAATACTACA
GAGAATTGTGCGGAAAAGAAAGGTCAAAAAAGAATATTCTGCTGAGAAAAAGGGAGGGAA
CAACAGAAGCAGGAACTCAAAAGGTACCGCTGCTAGTATAAGTTCTATAAACAAGTATCA
GAACAACAAAGAGAAGGTAAATGCCAAGCATCAGGGATGTGCACTTCTTGTCCGTGGTAG
TGCTCGTAATATGGAAGGCATGGGTAACTATGTTCCATATAAATGGAAAAGGACGGTTTT
ATCGTGGATGATAGATCTGGGGGTGGTTTCACAAGATGCGAAGGTCANATACATGAACAA
AAAGGAACTCNAGGCATATTAGATGGTAGATTA

Homology of Contig U35_32384 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g55990.1	1537	2e-55
Arabidopsis v10	None