barSeed - Barley Seed Development Database

Probe CUST_4209_PI390587928

Source Contig U35_29182

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4209_PI390587928	Hv_44K_v2	CAAACCGAACATCTAATATGCATCATGGTTACAGGTACACAAGGTCTCAGTCGTGCCCTT	399	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.289	0.691	1.702	1.324	0.978	2.225
Raw	2.568	18.305	40.059	48.410	13.221	33.551

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC28387	585	3e-25	400 - 459	100	60 / 60	plus
Harvest35	U35_29182	585	3e-25	400 - 459	100	60 / 60	plus

Contig Sequence (585 bp)

>U35_29182 585 Hv_44K_v2
GGCAAGTTGTTGTTATAATGATAATGAACTGGCCGCTTCATTACAGTGTTGGGAGCAGTC
AATGGCTTCTCTAACAGCATTACTTCAGACTCACGCGGTTTGTTGTGATTGTAGCTGTAG
ATACTTTTGGTAACTGGCCTATGGCTATTACCCTGTAGTGGCCTGACGCTGAACATTCTA
ACCATTGAAGTGATTGCCAAGTTTCTATAACTAGGGAAAAAGGTTCTATTTACTGGCTTC
CTTTTGAGCATCAAATATCTGCCTTTCTCCGAAGCTAATTTTGCAATATAGGGAACTGGA
GATACAGTAGCGTGTTAGATATCGGCCCTGAACTCTGTTCAAACAATGTCCAGTGAAAAC
ATATTTTCTGCTGTGCTCTCTGTTTGCTGCAAATGTCATCAAACCGAACATCTAATATGC
ATCATGGTTACAGGTACACAAGGTCTCAGTCGTGCCCTTTCTGCCGCGGAAGCCTGAAGA
GAGTCCAGTCCAGGGACCTGTGGGTGCTCACCGGCGACGACGACGTGATCGACCCCGTGA
CCCTGGAGAAGGAGAACGTGAGGCACTTCCACAGCTTCATCGACA

Homology of Contig U35_29182 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None