barSeed - Barley Seed Development Database

Probe CUST_42085_PI390587928

Source Contig U35_32390

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42085_PI390587928	Hv_44K_v2	CCGAGGTCGCCTCTGCTGGCGAGGCAGTCGCTGCGGCGGACGTGGAGAAGGAGGAGGGGG	263	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363507	4558	2e-24	265 - 324	100	60 / 60	plus	ABC05801
MLOC	MLOC_65220.1	395	2e-24	110 - 169	100	60 / 60	minus	None
JLOC1	JLOC1_42906.1	401	8e-25	227 - 286	100	60 / 60	plus
Harvest35	U35_32390	323	3e-25	264 - 323	100	60 / 60	plus

Contig Sequence (323 bp)

>U35_32390 323 Hv_44K_v2
ACAAGCCAATCGTCCCCGTCTCGCCCTCCGCCTCGCGCCGCCTCTCCTCTCCCCCTCCCC
TCCCTTCCCCTGGTGGTGCCGAGGCTTCCGCGGCGCCTCCGCGGGCGGCAGGAATATGGC
GGGCAAGTCCAAGGGTGCGAGGAACAAGGCCAAGGCACAGGCCGCCAGCCAGGATGCCGT
CTCGGTGGAGCCGGCGGTGCCGGTCACTGATGTGGTGGAGGAGGCCAAGCCCGAGAACGG
GGAAGTGACCGATGCCCCTGCTGCCGAGGTCGCCTCTGCTGGCGAGGCAGTCGCTGCGGC
GGACGTGGAGAAGGAGGAGGGGG

Homology of Contig U35_32390 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None