barSeed - Barley Seed Development Database

Probe CUST_42084_PI390587928

Source Contig U35_32391

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42084_PI390587928	Hv_44K_v2	AGACTAGCTGCCATCCTTTGTATACAGGATCTCTGTCGTGCTGACCCAAATCACTTACTT	420	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.900	1.602	1.189	0.754	0.688	0.580
Raw	304.992	341.339	258.029	217.372	82.756	76.357

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_23812.5	1762	4e-23	705 - 765	98	60 / 61	plus
JLOC1	JLOC1_23812.4	1719	4e-23	714 - 774	98	60 / 61	plus
JLOC1	JLOC1_23812.3	934	4e-23	714 - 774	98	60 / 61	plus
JLOC1	JLOC1_23812.2	927	4e-23	707 - 767	98	60 / 61	plus
JLOC1	JLOC1_23812.1	1887	4e-23	830 - 890	98	60 / 61	plus
Harvest35	U35_32391	484	3e-25	421 - 480	100	60 / 60	plus

Contig Sequence (484 bp)

>U35_32391 484 Hv_44K_v2
GTTATGGACTCTGTGTCAGCAAGGAACCTTATTATTGAGAGTAGTGTTATGTCAAGATTT
TATACTTCCTTTCTTCGTTGTCTGCATTTCGTTCTTTCAGAACCAAAAGCTTCACTTTCA
GGACATGTAGCAGGTTTTGTGGCAAATTTGCAAATGTTTTTTGTGTATGGGCTAAGGTCA
TCTTCGCCATCTGCGATAACTCCGAAGGAAAACAAAACAGACTCACAATCCAGAGCTTCT
TGCCATGGACGATATAAACCACCTCATTTACGAAAAAAGGATGGAAAAACAAATGATTCA
TTGGATGATCGAAGTTCAGATAGTGAATCTTCTCGGTATGATTTAGGCTCATCAGATTCT
GATCTAAGCGATACTGATGGATATGCANAANATGGAGACCGTTTCGGGAGTTCGAAAGCT
AGACTAGCTGCCATCCTTTGTATACAGGATCTCTGTCGTGCTGACCCAAATCACTTACTT
CGCT

Homology of Contig U35_32391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g17027.3	955	3e-62
Arabidopsis v10	None