- Probe CUST_42076_PI390587928
- Source Contig U35_44375
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42076_PI390587928 | Hv_44K_v2 | GCGGTGTATGCTGTACATTAAATCATCTCTTTCATCAGTATTGTATATAGTGTTGCCAAA | 13 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.886 | 4.133 | 1.118 | 0.795 | 0.267 | 0.238 |
| Raw | 146.568 | 173.781 | 39.392 | 48.669 | 3.509 | 3.426 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_51041.1 | 1199 | 9e-22 | 520 - 574 | 100 | 55 / 55 | minus | ABC42024 |
| MLOC | MLOC_51041.2 | 1584 | 9e-22 | 185 - 239 | 100 | 55 / 55 | minus | ABC42024 |
| JLOC1 | JLOC1_32569.1 | 854 | 5e-22 | 198 - 252 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC42024 | 400 | 3e-25 | 14 - 73 | 100 | 60 / 60 | minus | ABC42024 |
| Harvest35 | U35_44375 | 400 | 3e-25 | 14 - 73 | 100 | 60 / 60 | minus |
Contig Sequence (400 bp)
>U35_44375 400 Hv_44K_v2 TTTTTTTTTTTTTTTTGGCAACACTATATACAATACTGATGAAAGAGATGATTTAATGTA CAGCATACACCGCTAGCCGTCCTTTCCTTTGGAGGCTTGAACGCAAACTTTACGCTAGAA AAGTGTCCGGCGTGGTGACCGGAGACCCCACGCCGGCCGGCCTGCCATGCAAAGGCAGCC GCGCGTGCCTTTCCGGCCGGCGATGGCGCGCCTCGCCGGGGCCAGGTAGCCACATTGGCC GTTAAACAGGGACGGGCTTTCTTGCGGTCAAGGCAGCAAATACTTTGGCTTACAGGTGGG GCCTGCTTGTCATGCTTGGGTGAGTTGGCGTGCGATCGAGTATGCACGTTGTCTCCTGGC TCGCGCGCGCATCACACCGGGGGTTCCCCGCCGTTGGCGA
Homology of Contig U35_44375 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |