barSeed - Barley Seed Development Database

Probe CUST_42052_PI390587928

Source Contig U35_3311

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42052_PI390587928	Hv_44K_v2	TGGATTACAGCTGAGAAAGTTGTCTATGAATAGAGACCCTGGCCTTGGAACTCCAAAAAA	1019	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.518	1.302	1.070	0.704	0.650	0.725
Raw	108.764	132.527	106.269	103.279	33.992	43.260

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30413.1	2357	3e-21	1471 - 1524	100	54 / 54	plus	ABC07455
JLOC1	JLOC1_20125.1	1600	2e-21	1458 - 1511	100	54 / 54	plus
Harvest21	ABC07455	1090	3e-25	1020 - 1079	100	60 / 60	plus	ABC07455
Harvest35	U35_3311	1090	3e-25	1020 - 1079	100	60 / 60	plus

Contig Sequence (1090 bp)

>U35_3311 1090 Hv_44K_v2
GGGCCTTCAACTGGAACTTACTCATGCAAGGAATACATGTGAGTTGGAGCAGAAGGGGAA
CTTTGAGTTGGTGGAACAAAGGAAAGCAATGGAGAAGAGTATGATTTCGATGGCACAAGA
AATTCAACAAATGCGGGCCGAATTAGCTAGTTTTGATGGCAGACCATGGGGCACAGGTTG
AATCCTCGGTTGGTCCTTTCCTCTTAGAGAAGATATATTCCTTCACGTGAAAGAGCTGTC
ACTGCCAGAACACAGTAAATATGGTAATGGGGATAACTGTTGCCTTTCTGATGCCGAAGG
TTCTATGCCAGTTAACTGATACATCTAGAATTGCGCTCTTCTAGAGTATCAGATTTTCTA
GACATTCTAGACATTCCTGAAAAGAGATCAAGACATGGATTATCATACGATATGAGAAAT
GGTTAAAACAGTCAAGAGTGATCTTTAACATCTGCCCTAGCAACACTTAGAAGGTCTTGA
ATGTGGGAGCGTGGACGATTGGGTTCATTTGCAGGCATTAAGTTTTGTTGTGGTTTTGGG
GGAAGAGTGAGCTTGTGCCATAGAACTTTCTGGTTGTCTGGAAGTCTCCTCTGTGTCACT
GTCATGATAATTTCCTTTCTCCACAGACAAGTTGAAAAGAGTGCTGCAAATTGTATAGGT
CAGTTGGTGGATTGAACTGCGACTACCCATGATGCTTCCAGTTGCTGCATTTGGAGGTAG
TCACCAGTTTGGCCAGCAGTGAGGTGTAAGTCAGTACAGCCGTGTGATGCTTAAGATGTC
GGGAATAAAATAAGTTGTTCCGTGCATGGGCTGGAGGCAATGAAGACATGATTTCAGAGT
CCTTGACTCGCGTTATGCTGTTTTGATGATCATGATGTTGGTAAGGCATTGCCATCTTGT
CAGGACCTACCTACACATAGACAAAGTCACTCGTTATGAGCATGATTTTGCCGCTCAAGA
GTTTTACTGAAAGTGAAGATCCTGCAAGTCACCCGTTGTGCACATTGGGAGCATATTTCT
GGATTACAGCTGAGAAAGTTGTCTATGAATAGAGACCCTGGCCTTGGAACTCCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_3311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None