barSeed - Barley Seed Development Database

Probe CUST_42048_PI390587928

Source Contig U35_35765

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42048_PI390587928	Hv_44K_v2	GAGGCACAGGTCATACCAAAAACCAACATATCACCTGAACAATGCACACAGCAGGAGATT	497	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.097	1.235	1.423	1.056	0.626	0.540
Raw	131.185	212.435	230.361	260.044	54.862	52.285

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50473.2	1613	2e-24	1147 - 1206	100	60 / 60	minus	ABC17746
MLOC	MLOC_50473.3	1041	2e-24	528 - 587	100	60 / 60	minus	ABC17746
MLOC	MLOC_50473.1	1763	2e-24	1250 - 1309	100	60 / 60	minus	ABC17746
JLOC1	JLOC1_32204.1	1712	8e-25	383 - 442	100	60 / 60	plus
Harvest35	U35_35765	560	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (560 bp)

>U35_35765 560 Hv_44K_v2
TATAGGGCGAATTGGGCCCTCTTCATAAAGCTCGAGCGGCCGCTGCTAGTCCCGATCCTT
CTTCAGTAACTGGTTCAGGACAAGATTCAACGCAGGTGGGAATCACGGAATCAGATCATT
TAGATCTATTGATTGAGCAAGTTAAGATGCTTGCTAGGGAGATTGCGTTTGGTACCAGTT
CACTGAAAAGACTAATTGAGCAATCCATAGAAGACCCTGAAGGGACAAAAAATCAAATAG
AGGATTTAGAGCATGAAATCCAGCAAAAGAGGAGGCATCTGCGAGCCCTGGAACAAAAAA
TCATGGAAAGTGGTGAGGCATCAGTTGCTAATGCTTCTATGGTGGATATGCAGCAGACTA
TTACAAAGTTGACAGCTCAATGCAATGAGAGGGCTTTTGACTTAGAGTTAAAATCAGCAG
ATAATCGTGTCCTTCAGGAGCAGCTACAACAGAAGAGTATGGAAATCAATGATTTACAAG
AAAAAGTTCTGCGCCTTGAGGCACAGGTCATACCAAAAACCAACATATCACCTGAACAAT
GCACACAGCAGGAGATTCTT

Homology of Contig U35_35765 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36880.1	1060	3e-80	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g30547.1	1024	6e-86
Arabidopsis v10	None