- Probe CUST_42041_PI390587928
- Source Contig U35_23791
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42041_PI390587928 | Hv_44K_v2 | AAACTCGAGAGCAGGAATTATATATATATGTATACCTGGCAGTAAGGCTCTCTCCGTATG | 415 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.151 | 2.168 | 0.709 | 0.732 | 1.000 | 0.890 |
| Raw | 22.138 | 23.875 | 6.398 | 9.099 | 3.111 | 3.242 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374210 | 1649 | 2e-24 | 1253 - 1312 | 100 | 60 / 60 | plus | ABC19050 |
| MLOC | MLOC_74315.6 | 863 | 2e-24 | 317 - 376 | 100 | 60 / 60 | minus | ABC19050 |
| MLOC | MLOC_74315.1 | 1554 | 2e-24 | 610 - 669 | 100 | 60 / 60 | minus | ABC19050 |
| MLOC | MLOC_74315.3 | 1277 | 2e-24 | 529 - 588 | 100 | 60 / 60 | minus | ABC19050 |
| JLOC1 | JLOC1_49522.3 | 1311 | 8e-25 | 620 - 679 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19050 | 766 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus | ABC19050 |
| Harvest35 | U35_23791 | 766 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus |
Contig Sequence (766 bp)
>U35_23791 766 Hv_44K_v2 TCACCTGCTGAAGATTTCTTCGGCTGTTGTATCTTGTCTAGCCTCCACATTCTCAGTTCC GCTGTCGATCTACGCTTTCACTCTACCGCTGCCGTACATCAGCGTGGCGTCGACCCTCCC TCCCGGCTTTGTTGCAGGCGCGGCGGTTCTCATTGCCGGCTTGCTAACATATAGCCTTCC TCAGCCACAAAATTGCGAGAAAACCAGGAATGACTAGGTAATCAACATTCATTTCTTGGT AATTCTACATAACCATGGCTGGCTCCTCATCTGGCCGGGGCTTGAAAGGCAGAGCAGAAA TTCTCCTGAGAGCCACCTGACCTGACTGTTGTGTGTTGTATGGTAGCATGTCATGTCATA TGTATATGTATATCCAATAAAAGCAAGCAAAAGCTGCATGGATGTAGATAGAATAAAACT CGAGAGCAGGAATTATATATATATGTATACCTGGCAGTAAGGCTCTCTCCGTATGTTGTT CTTACTGGGAGAAGGTGGGAGATGGAGGATACTCGCAGTTTGTGGAGGGGAAGAGAACCA GGGAGAAGAGCAGCAGCATCATCACCACGGGGACGAAGAGCAGGAAGGCCGGCGGCGGTG GCAGCGGCGGCAGCATCAGTGGGAGGCACAGGAGCGTCGCCGCCGCCGCCAGCACGATCA TCAGGAGGACGCCTCTGTCCATCTGAGGCTAGTGGATGTTCATCTCTCTGTGTGCGTGTG TGTTTTGGTTGGGTTCCTTGGAAGAGGAAGGAAAAACTTTTGTGTT
Homology of Contig U35_23791 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |