barSeed - Barley Seed Development Database

Probe CUST_4203_PI390587928

Source Contig U35_29186

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4203_PI390587928	Hv_44K_v2	AGTGATTGATATTTCTCTGGTGGATGGCACGTTGCGGATCCACAGTAAGATGCTGAATAT	253	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68622.1	3320	7e-23	844 - 903	98	59 / 60	plus	ABC07074 ABC40042
JLOC1	JLOC1_45413.4	2836	4e-23	548 - 607	98	59 / 60	plus
JLOC1	JLOC1_45413.3	3146	4e-23	548 - 607	98	59 / 60	plus
JLOC1	JLOC1_45413.2	3164	4e-23	548 - 607	98	59 / 60	plus
JLOC1	JLOC1_45413.1	3139	4e-23	548 - 607	98	59 / 60	plus
Harvest21	ABC28391	385	3e-25	254 - 313	100	60 / 60	plus
Harvest35	U35_29186	385	3e-25	254 - 313	100	60 / 60	plus

Contig Sequence (385 bp)

>U35_29186 385 Hv_44K_v2
GACAGGATGGTGCTGGTTTCCTCTACTCCTTCCCAAGAGCAAAGTTATGCACCAGTATTG
CAGCATTAACACTCCAGCTTATAGTGGCAACGTTAGCAGCTCCAATAGCCCTGCCTGGTT
GCCCGGAAGTATGTGGCAGCATAGCTATCCCCTACCCTTTTGGCCTCGGGCAAGGGTGCT
TCCGCGCGGGCTTCAACCTGACGTGCGACGAGACGCGCCATCCACCGAAGCTGTTGGTGG
GCGATGGCGCAGAAGTGATTGATATTTCTCTGGTGGATGGCACGTTGCGGATCCACAGTA
AGATGCTGAATATNCCGTTGAACACAAGCTCTACTNAATCAAATGGCTCATGGNCCGTTG
GACTGAAGGACGAGGGCCCACTGAT

Homology of Contig U35_29186 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None