barSeed - Barley Seed Development Database

Probe CUST_4202_PI390587928

Source Contig U35_29187

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4202_PI390587928	Hv_44K_v2	TAGGAACATTGTGGTTTAACAGTGCAAGGAGCTGTTTGCCAGAGGAAGGACAAAAATGGG	451	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.686	0.801	2.104	2.817	1.081	1.038
Raw	59.281	99.619	244.709	504.679	72.356	74.003

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80801.2	930	2e-24	845 - 904	100	60 / 60	plus	None
MLOC	MLOC_80801.3	693	2e-24	633 - 692	100	60 / 60	plus	None
MLOC	MLOC_80801.1	818	2e-24	688 - 747	100	60 / 60	plus	None
MLOC	MLOC_43033.1	285	3e-21	167 - 226	97	58 / 60	plus	None
JLOC1	JLOC1_53794.1	777	8e-25	600 - 659	100	60 / 60	plus
Harvest21	ABC28392	513	3e-25	452 - 511	100	60 / 60	plus
Harvest35	U35_29187	513	3e-25	452 - 511	100	60 / 60	plus

Contig Sequence (513 bp)

>U35_29187 513 Hv_44K_v2
GGCCCGCATCCATCCATCCGCCCACCTTCCCAAACCCTCGATTGGAGCGGAGCGGAGGCG
ACGGATGCGGGTGCCGCCGCCGCAGCCGCAGCCGCCGGAGCGCTCCGACGACAACCACCA
GTTCCAGATCTGACCGGAATGGCGATGCGGGGCGTCGATTTCAAGTGGTACGACGGCTTC
TTCCTCTCCATGCTCGCCACCAGCGTGATCATCGTGTCCATCAACTGGAGGAGGTACCGC
CTCTGCGCGCACCCGCTCCACATATGGATCGTCGTCGACTACACCACCGTCTTCGTCTTC
CGCCTCCTCATGTTCCTCGACAACGGCCTCGCTGCAGGGATGGGACTGGATCTTGGATGG
CAACAGAGATATACTCGTTTCTGTGGGAGGATACTTGTTCTCTCAGTCCTTGTACTTCTT
CTCTACCCCTTTCTGTGGGTTTGGACTGTGATAGGAACATTGTGGTTTAACAGTGCAAGG
AGCTGTTTGCCAGAGGAAGGACAAAAATGGGGC

Homology of Contig U35_29187 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05280.1	387	1e-76	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi2g40110.1	383	3e-79
Arabidopsis v10	AT3G47990.1	358	5e-65	\| Symbols: SIS3 \| SUGAR-INSENSITIVE 3 \| chr3:17713367-17716051 REVERSE LENGTH=358