- Probe CUST_42029_PI390587928
- Source Contig U35_35775
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42029_PI390587928 | Hv_44K_v2 | TTATGAGATCGAATCTCTTGTAGTAGTACATAGGACTTGTTGCTGAAAGTGCGGGGTAAG | 47 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.998 | 1.397 | 1.188 | 1.256 | 0.442 | 0.859 |
| Raw | 31.877 | 68.468 | 52.487 | 85.837 | 10.402 | 22.789 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC16950 | 622 | 8e-21 | 196 - 247 | 100 | 52 / 52 | minus | ABC16950 |
| Harvest35 | U35_35775 | 499 | 3e-25 | 48 - 107 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_7923 | 678 | 8e-21 | 376 - 427 | 100 | 52 / 52 | plus |
Contig Sequence (499 bp)
>U35_35775 499 Hv_44K_v2 TATAGGGCGAATTGGGCCNCTTCGATACATGCTCGAGCGGCCGCTCCCTTACCCCGCACT TTCAGCAACAAGTCCTATGTACTACTACAAGAGATTCGATCTCATAATAACTATCTGCCA CTACAGCAATTGTGTCGATGAATATTTTAAGCAACAATTCTGTGAGGTTTAGCGGAATGC TAGGATAGAACTACGTGGGAAGAGGTTACTGGAAAATATTAGTGGCCTTGCTCAGATCAT ACACTGCCGGAGTAGCCTTCAAATAACCACTGGAAGTTTTTAAACCAGCACAAAGCAGCA TGCATATTACACCAGGAGTGTCCCGGCCATGACAGTAATAGTTTCTCCTTGGATTTTCAC TCTCCGATTTGCGTCATCCAGTTCCAGGTATAGCGTTCCACCCCTTGGAGATGCTTGAAA TGCCTTCAGTTTTTGCTTCCCAAGCTTTCTACCCCAATAGGGTCCCAATACACAGTGTAT ACTGCCAGTAACAGGGTCC
Homology of Contig U35_35775 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |