barSeed - Barley Seed Development Database

Probe CUST_42008_PI390587928

Source Contig U35_47774

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42008_PI390587928	Hv_44K_v2	GTTTGTTTCTGCAGCTTTGTGAGTGTTGCGGGGGAGCATGACCATGTCCTTCTCGTGCGC	128	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357567	1983	6e-24	259 - 317	100	59 / 59	plus	ABC11316 ABC11317 ABC49874
MLOC	AK252537.1	1783	6e-24	190 - 248	100	59 / 59	plus	ABC11316 ABC11317 ABC49874
MLOC	MLOC_53730.1	1340	6e-24	273 - 331	100	59 / 59	plus	ABC11317
JLOC1	JLOC1_34532.1	1311	3e-24	247 - 305	100	59 / 59	plus
Harvest21	ABC15221	557	1e-24	160 - 218	100	59 / 59	plus
Harvest35	U35_47774	337	3e-25	129 - 188	100	60 / 60	plus
Harvest35	U35_17692	558	1e-24	160 - 218	100	59 / 59	plus

Contig Sequence (337 bp)

>U35_47774 337 Hv_44K_v2
GGGAAGACCTGCTGGGCGAGGCCATGTGCGCCGGCGCGCGGGTGGTGGTCGTGGAGGACT
GCGTGGAGGCGCCAGGCGCTTTCGATCTACACCTACTCCTCAAGCGCGCGCTCGACGTGG
GCGGGGTTGTTTGTTTCTGCAGCTTTGTGAGTGTTGCGGGGGAGCATGACCATGTCCTTC
TCGTGCGCGAGCGTTCGCCTTCACGGCCGCGTTGGCACCGTCAAGTGCCGGGCCGTTCTA
GCTAGGCCGAGCGGCTGTTCGTACCCGACTGGAAGGAGGTGGATTGCTAGAGGGATCTGT
TGCCAGCTGCCGCCGCACAGCGGTGCGGATGGGAGCG

Homology of Contig U35_47774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None