barSeed - Barley Seed Development Database

Probe CUST_42007_PI390587928

Source Contig U35_47776

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42007_PI390587928	Hv_44K_v2	CACAATGGTGATTTTGGATACTATACCAGGCAGCCTGATCAGGCAAGTAGTGCATACAAT	359	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67139.2	2843	2e-24	703 - 762	100	60 / 60	plus	ABC17121
MLOC	MLOC_67139.1	3137	2e-24	1031 - 1090	100	60 / 60	plus	ABC17121
JLOC1	JLOC1_44291.1	3114	8e-25	955 - 1014	100	60 / 60	plus
Harvest21	ABC49162	478	3e-25	360 - 419	100	60 / 60	plus
Harvest35	U35_47776	478	3e-25	360 - 419	100	60 / 60	plus

Contig Sequence (478 bp)

>U35_47776 478 Hv_44K_v2
GCCAAAACCCCAAGGGCGATATACCAAGTGCTCATCAGCAGCATGGTGTCACACCTGCTA
TTAATGGCCTTTCTGCAGATGGTAATGTGCAAAGGGGTCGTGACGTTACTGGATATGATT
GCAGCTCTGGATACAATTCCCGAAGTAACCAGGAGAGCTATACTAGTGAGCAGTATGGAT
ATGGCCCGCCAATACTGTCACATCAAAGCTCAACTGGAAGTGACCAGCAAGTCTTTCAGC
AACAGAAGGTTGATCGAATATCTAATGGTAATTACTTCAACAAGCCTCGCAATTCTGCCT
CACAGTATCCAACTCCAAGCAGTTCTCATAAGGAGCATGTTGCAGGATCTCAACAAGGCC
ACAATGGTGATTTTGGATACTATACCAGGCAGCCTGATCAGGCAAGTAGTGCATACAATC
GCCCAAGTCCTAATGGAGGTCCATCAAGTACTCATCAGCAGCACAATGGCACTGGATA

Homology of Contig U35_47776 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g49207.1	910	1e-59
Arabidopsis v10	None