- Probe CUST_42000_PI390587928
- Source Contig U35_47787
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_42000_PI390587928 | Hv_44K_v2 | GCGTTGAGTTCTAATGGTAAAAGCATGTATGCGCAGATTTCTTGACAATTGTATAAATCT | 271 | GeneList: brown MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.706 | 1.730 | 1.095 | 0.781 | 0.313 | 0.406 |
Raw | 45.648 | 70.756 | 39.843 | 47.802 | 5.383 | 8.974 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_9890.2 | 3233 | 2e-24 | 3152 - 3211 | 100 | 60 / 60 | plus | ABC49188 |
Harvest21 | ABC49188 | 386 | 3e-25 | 272 - 331 | 100 | 60 / 60 | plus | ABC49188 |
Harvest35 | U35_47787 | 386 | 3e-25 | 272 - 331 | 100 | 60 / 60 | plus |
Contig Sequence (386 bp)
>U35_47787 386 Hv_44K_v2 GCTGCGTTACAACTGAAGAATGCAGAGGCCGATACCTTGCACATTTACAATCTAATCACT TCAGCGCTCAACTGCTTAAAAGATAGTAGGGGGGCATACGGCAGTACATGGTTTATGCAA ACATATATATCAAGTGATCTCCTTGTTCTTCAGCAGATAAAGGTGATAGTTGCACTTCGG AAAGATAAAAAAACGTGGGCGTGTAAGGGTGGATTCTGTAAAGAAGAAAGCCTGTTATAT TACCATATTTTATTTATTATGATTGAAGAGAGCGTTGAGTTCTAATGGTAAAAGCATGTA TGCGCAGATTTCTTGACAATTGTATAAATCTTGATTTGAAAATTCTAAGTGCGTACTATG TTTGGATTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_47787 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |