- Probe CUST_41_PI415269222
- Source Contig AV833209
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41_PI415269222 | Hv_44K_v2 | GGGCAAGTTTATCTTGAAAAGGATGTTATCCTTCCATATGTCCCAAATGTTGACCTTTGT | 532 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.989 | 1.095 | 1.426 | 1.190 | 0.370 | 0.328 |
| Raw | 28.880 | 46.719 | 58.262 | 69.551 | 7.911 | 7.556 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376459 | 1746 | 2e-24 | 815 - 874 | 100 | 60 / 60 | plus | ABC49967 |
| MLOC | MLOC_59543.1 | 1499 | 2e-24 | 842 - 901 | 100 | 60 / 60 | minus | ABC49967 |
| MLOC | MLOC_59543.3 | 1062 | 2e-24 | 450 - 509 | 100 | 60 / 60 | minus | ABC49967 |
| MLOC | MLOC_59543.2 | 1479 | 2e-24 | 842 - 901 | 100 | 60 / 60 | minus | ABC49967 |
| JLOC1 | JLOC1_38756.4 | 1603 | 8e-25 | 598 - 657 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38756.3 | 1583 | 8e-25 | 578 - 637 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27242 | 656 | 3e-25 | 533 - 592 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28398 | 656 | 3e-25 | 533 - 592 | 100 | 60 / 60 | plus |
Contig Sequence (599 bp)
>AV833209 599 Hv_44K_v2 GGCGGAGGAGGCCCGGCTGTACGGGGACCCCCGGGGCGCGTGGCCGTCGGCGCCCGCGCC GCTCAGGGTCTACGTGTACGAGATGCCGCGCAAGTTCACCTACGATCTGCTCAGGCTCTT CAGGGACTCGTACCGCGACACCACCAACCTCACCTCCAACGGGAGCCCCGTGCACAGGCT CATCGAGCAGCATTCTATTGACTACTGGCTGTGGGCTGATCTAATTGCTCCTGAATCACA AAGACTTCTGAAGAATGTTATCAGGGTTGAGCGGCAAGAAGAAGCAGACATTTTCTACGT TCCATTTTTCACAACAATCAGTTACTTCTTGCTGGAGAAACAAGAATGCAAGGCACTTTA TAGGGAAGCTTTGAAGTGGGTGACTGATCAACCTGCTTGGCAACGTTCAGAAGGCAGAGA TCATGTTATTCCTGTTCATCACCCATGGTCTTTTAAGTCAGTCCGAAGATTTGTTAAGAA AGCAATATGGCTTCTACCTGATATGGATTCTACTGGGAACTGGTATAAACCTGGGCAAGT TTATCTTGAAAAGGATGTTATCCTTCCATATGTCCCAAATGTTGACCTTTGTGATTATA
Homology of Contig AV833209 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g59630.1 | 500 | 6e-136 | protein|exostosin family domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g53000.1 | 496 | 7e-141 | |
| Arabidopsis v10 | AT5G16890.1 | 511 | 4e-112 | Exostosin family protein | chr5:5551664-5554741 FORWARD LENGTH=511 |