barSeed - Barley Seed Development Database

Probe CUST_41999_PI390587928

Source Contig U35_47788

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41999_PI390587928	Hv_44K_v2	AGAAGATCTTCCGTTTGGGCCTCGCTGCTGACGTCGTCCTCACCGTAGAGAAAGCCATCA	196	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375814	1753	7e-23	267 - 326	98	59 / 60	plus	ABC39056
MLOC	MLOC_25720.1	789	7e-23	466 - 525	98	59 / 60	minus	None
MLOC	MLOC_25720.2	832	7e-23	382 - 441	98	59 / 60	minus	None
JLOC1	JLOC1_17524.1	649	4e-23	286 - 345	98	59 / 60	plus
Harvest21	ABC49190	360	3e-25	197 - 256	100	60 / 60	plus
Harvest21	ABC16369	1481	1e-23	195 - 254	98	59 / 60	plus
Harvest35	U35_47788	360	3e-25	197 - 256	100	60 / 60	plus
Harvest35	U35_8715	1481	1e-23	195 - 254	98	59 / 60	plus

Contig Sequence (360 bp)

>U35_47788 360 Hv_44K_v2
TTCGCCCAACTCGCCGGCGGGATCACCCGAGCCGCCTTCTCCCGCCGTGCGCGACACCTC
TCCCCAGCCTGCGCCCGCCGCGTGCTTGCCCCTCTCGCCTCGCCGGGTGAGTCTAGCGGC
GGCAACTGGCTCGTTCCTGCCCGCGGCCACGGTGGCCACTCCGGCGACCGCGGCGAGGAA
AGCGGCGAGGCGTCTGAGAAGATCTTCCGTTTGGGCCTCGCTGCTGACGTCGTCCTCACC
GTAGAGAAAGCCATCACCGGCTACCTCTCCGGCAGCAGGGCCATCACCGNCGACGCCGCT
CACTCCCTCTCTGACATCGCGCTGAGTGGGGTGGTTCTGCTGTCGTACAAGGCGGCCAAG

Homology of Contig U35_47788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None