barSeed - Barley Seed Development Database

Probe CUST_41996_PI390587928

Source Contig U35_47791

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41996_PI390587928	Hv_44K_v2	CCTCTTTGCTGGCTTGTTGAATCTTGCAATTTAAAACGTGTATAAGTTGCTAGAATTTGA	326	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360054	1206	2e-24	710 - 769	100	60 / 60	plus	ABC49201
MLOC	MLOC_30045.1	1270	2e-24	810 - 869	100	60 / 60	minus	ABC15405 ABC15406 ABC49201
MLOC	MLOC_30045.2	1442	2e-24	982 - 1041	100	60 / 60	minus	ABC15405 ABC15406 ABC49201
MLOC	MLOC_30725.1	337	7e-23	247 - 306	98	59 / 60	plus	ABC49201
MLOC	MLOC_29032.1	119	7e-23	53 - 112	98	59 / 60	minus	None
JLOC1	JLOC1_19916.1	1034	8e-25	574 - 633	100	60 / 60	minus
JLOC1	JLOC1_20289.1	322	4e-23	232 - 291	98	59 / 60	plus
Harvest21	ABC49201	406	3e-25	327 - 386	100	60 / 60	plus	ABC49201
Harvest35	U35_47791	406	3e-25	327 - 386	100	60 / 60	plus

Contig Sequence (406 bp)

>U35_47791 406 Hv_44K_v2
GCTCCCTTCTTCTCAATCCGGCGCGCCCATGAGCTGGTGGTTGGCTCGACCCAAGCGCCT
CGTCCAGCCATGGAGCTGGCTCTACTACCGTCGCTCGATTTGGACGCCCGCGCCCAGTCG
CCTGCGGCCCGGCCTGCGGCAGCGGTTCTCGTGCCGTGGTGGTGGAGCCTCACTCTCCGG
TGGGCGACGGGGGCTGCGGGGCCTGTGAGCAGTGGTGGCATGGTTGCTTGCCAGATCTGG
CTGCGGTGATTGAAGACTTCACGCTCGGTTTGGATGGTTTATTGGATTTATGCGCCATTC
CTCCTCTTTGATTGCTCGTATCTCATCCTCTTTGCTGGCTTGTTGAATCTTGCAATTTAA
AACGTGTATAAGTTGCTAGAATTTGATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_47791 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None