barSeed - Barley Seed Development Database

Probe CUST_41992_PI390587928

Source Contig U35_47795

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41992_PI390587928	Hv_44K_v2	AATCAATCAAGGAGGCTTCATGGTCTCCCTGCCTTCGAAATCACTTGTCCTGAAGAATAG	305	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.176	1.099	1.209	1.017	0.452	0.458
Raw	1227.571	1812.033	1731.067	2322.386	355.562	397.455

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375583	1308	2e-24	864 - 923	100	60 / 60	plus	None
MLOC	MLOC_31445.1	895	7e-23	478 - 537	98	59 / 60	minus	None
MLOC	MLOC_31445.2	1052	7e-23	478 - 537	98	59 / 60	minus	None
JLOC1	JLOC1_20654.1	1129	4e-23	516 - 575	98	59 / 60	plus
Harvest21	ABC49213	422	3e-25	306 - 365	100	60 / 60	plus
Harvest35	U35_47795	422	3e-25	306 - 365	100	60 / 60	plus

Contig Sequence (422 bp)

>U35_47795 422 Hv_44K_v2
GCGGAGACGGCTAGGACGGAGCCGGCGACCGAAGGGAAGGTGGATGGCGAGGAGTGGGTC
ACTGTATTCGGATTCTCCCTTAGAGATACCAACCTCGTTCTCCGAGAGTTTGAGAAATGT
GGTGTTATACTGAGACATCATTCTGGCCCAAGAGAGGGTAATTGGATCCACATATTATAC
CAGCACTCTTATGATGCAAGGAAAGCCCTTCAAAAGAATGGCATCCAACTATGCAGTGGC
GTTATAATTGGAGTGAAGCATATTGATCCCATGCACCGGCAGCAGCTGGATGACAGGTTC
ACTGGAATCAATCAAGGAGGCTTCATGGTCTCCCTGCCTTCGAAATCACTTGTCCTGAAG
AATAGCACAGGCGCATCAAACCAACTAGGAGCCTTGCCACGCCCGTATGACCCGAAGTCC
TC

Homology of Contig U35_47795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g44380.1	354	4e-63	protein\|MPPN domain containing protein, expressed
Brachypodium v1_2	Bradi2g19500.1	331	2e-86
Arabidopsis v10	None