barSeed - Barley Seed Development Database

Probe CUST_4198_PI390587928

Source Contig U35_43481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4198_PI390587928	Hv_44K_v2	GTTTGAAAGTGGAGAGTCAGGTGAAACTTTCTGATGATAATGAGAAAGAAGTTACTGAAG	293	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.213	1.168	1.290	0.903	0.615	0.417
Raw	109.161	157.550	157.311	158.733	40.289	30.614

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43717.3	4635	2e-24	2820 - 2879	100	60 / 60	minus	None
MLOC	MLOC_43717.4	4448	2e-24	2765 - 2824	100	60 / 60	minus	None
MLOC	MLOC_43717.2	4691	2e-24	2898 - 2957	100	60 / 60	minus	None
MLOC	MLOC_43717.1	4925	2e-24	3105 - 3164	100	60 / 60	minus	None
JLOC1	JLOC1_28268.4	4538	8e-25	1583 - 1642	100	60 / 60	plus
JLOC1	JLOC1_28268.3	4645	8e-25	1697 - 1756	100	60 / 60	plus
JLOC1	JLOC1_28268.2	4642	8e-25	1694 - 1753	100	60 / 60	plus
JLOC1	JLOC1_28268.1	4652	8e-25	1697 - 1756	100	60 / 60	plus
Harvest21	ABC40180	372	3e-25	294 - 353	100	60 / 60	plus
Harvest35	U35_43481	372	3e-25	294 - 353	100	60 / 60	plus

Contig Sequence (372 bp)

>U35_43481 372 Hv_44K_v2
TTTTGATAACACGAAGAAGTCTCCTAGCTTACCAAAGGAAGGGATGCCAATGGCTGTGAA
AGCCGATCATCGAAGACCTCATGCATTGTCTTGGGAGGTCAGACGGATGACAAGTTCACC
ACACAGGCAAGAGATATTGTCTTCATCTCTAGAGGCCTTCCAGAGGATTCAGTTCGAACT
GGCACGCAAGCAGGCTGGTATAACTGGAGAGAGCTTTGCATCTAGCTCTTCTGGGGAAGT
TTCAGGTATTTCAGCAAAGCTGACTACAGCATCAGCAACAGTTGGGAATATCAGTTTGAA
AGTGGAGAGTCAGGTGAAACTTTCTGATGATAATGAGAAAGAAGTTACTGAAGAGAGACA
AAGTAAGGAGGC

Homology of Contig U35_43481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None