- Probe CUST_41988_PI390587928
- Source Contig U35_6701
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41988_PI390587928 | Hv_44K_v2 | CAAGTGACATTTTGTCGCGTATTTGGATATATCCAAACTTATGAGATGCGTCCTACTATT | 477 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.683 | 1.708 | 1.084 | 0.783 | 0.325 | 0.346 |
| Raw | 211.424 | 318.670 | 187.716 | 207.364 | 30.940 | 35.776 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_10658.1 | 1955 | 2e-24 | 10 - 69 | 100 | 60 / 60 | minus | ABC20267 |
| JLOC1 | JLOC1_6991.1 | 2108 | 8e-25 | 1920 - 1979 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20267 | 559 | 3e-25 | 24 - 83 | 100 | 60 / 60 | minus | ABC20267 |
| Harvest35 | U35_6701 | 560 | 3e-25 | 478 - 537 | 100 | 60 / 60 | plus |
Contig Sequence (560 bp)
>U35_6701 560 Hv_44K_v2 CACTATGAGAACGCCCGGACGTTTGACCCATGGAGATGGCAGAGCAACAACAAACTTCAG AATGAGGTAGGGGCCAACTTATTTACTCCCTTTGGCGGTGGACCTCGGTTGTGCCCTGGC TACGAGCTTGCTCGGGTCGTGATATCTGTTTTCCTCCATCATCTTGTGATGCGCTTTAGC TGGGAAGCGGCCGAGGAAGATAGGCTTCTCTTCTTTCCCACCACTCGAACCCTCAAAGGA TATCCAATCAATCTCACGCGACGATCGAAGTCTGTCTGAAGACCTCACGTTGGCCTTCGG CTCGTCTTTTCTTGAAAGCGAAATTAAACATAGATGAAGGGAAAAGAAAATCGGTAAACT AGCTAGCCTACTTTTGTTCCTTAGTGTTCTGTATCATTTGTAACCTGGTATTTACACAAC AGCGAAGTTGTGCTGCTTGTAAAATGTGTGGCCTAAACAGTTGGTGTGTACCGGTTACAA GTGACATTTTGTCGCGTATTTGGATATATCCAAACTTATGAGATGCGTCCTACTATTACC AAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_6701 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi4g43110.1 | 499 | 1e-55 | |
| Arabidopsis v10 | None |